. 2013 Nov 18;2(4):225–235. doi: 10.1530/EC-13-0065

Table 5.

Top 20 up- and downregulated probesets in the 3-M group as a whole and in each cell line by mutation.

Up-regulated probesets				Down-regulated probesets
3-M	CUL7	OBSL1	CCDC8	3-M	CUL7	OBSL1	CCDC8
ZIC1^a	PCP4^a	ZIC1^a	XIST	IGF2^a	IGF2^a	IGF2^a	IGF2^a
PCP4^a	ZIC1^a	PCP4^a	ZIC1^a	LEP^a	LGR5^b	LEP^a	CADM1
HOXC6^a	HOXA10^a	HOXC6^a	HOXC6^a	IGF2^a	COL4A1^b	EDIL3^c	PSG2
HOXA10^a	COL14A1^b	COL14A1^b	HOXA10^a	–	SFRP2	IGF2^a	IGF2^a
HOXA9^a	HOXA9^a	SNCA^c	HOXA9^a	BEX1^a	LEP^a	–	DDX3Y
IL13RA2^a	IL13RA2^a	HOXA10^a	PCP4^a	PTGDS^b	DIO2	COL4A1^b	LGR5
COL14A1^b	THBS4	HOXA9^a	PAX6	COL4A1^b	APOE^c	BEX1^a	PTGDS
GPC6^a	–	CLU^b	EMCN	LGR5^b	RARRES2^b	PTGDS^b	PSG3
CLU^b	HOXA11^b	–	XIST	IGF2^a	NID2	IGF2^a	BEX1^a
SLC6A15^b	HOXC6^a	CYP3A5	PAX6	GRIK2^c	TFAP2A^b	HAPLN1	RPS4Y1
HOXA10^a	TNXB	SLC6A15^b	GPC6^a	WFDC1^c	–	IGFBP5	MAOA
HOXA11^b	KCNB1	IL13RA2^a	CLU^b	TFAP2A^b	LXN	RARRES2^b	GRIK2
–	WIF1	GPC6^a	IL13RA2^a	RARRES2^b	IGF2^a	WFDC1^c	TFAP2A^b
CLU^b	GPC6^a	CLU^b	HOXA10^a	APOE^c	TLR4^a	HAPLN1	LEP^a
–	HOXA10^a	SPON1^c	XIST	WNT5A^c	APOE^c	SYNPO2^c	IGF2^a
ABCA6^b	ST8SIA1	SCARA3^c	WISP1	EDIL3^c	ITIH5^c	WNT5A^c	TRPC6
SCARA3^c	ACE	HOXA10^a	THBD	SIM2	PMEPA1	IGFBP7	FAM19A5
HOXA9^a	SLC6A15^b	ABCA6^b	THBD	–	PSG7	TPD52L1	ITIH5^c
SPON1^c	COL14A1^b	SPON1^c	H19	SYNPO2^c	DIO2	MRVI1	ITIH5^c
TBX5	ABCA6^b	SNX10	SNCA^c	PPP1R14A	BEX1^a	STXBP6	USP9Y

^aProbesets present in all groups; ^bprobesets present in the 3-M group and two mutation groups; ^cprobesets present in the 3-M group and one mutation group. –, probeset is designed to a gene which was not named at the time of the study.