Table 6.
Number of SNVs called by the SOAPsnp with different cutoffs of consensus score
Cutoffs | SNVs | dbSNPs | Non-dbSNPs | SNVs ≥ * |
---|---|---|---|---|
=0 |
41 |
10 |
31 |
968 |
=1 |
8 |
2 |
6 |
927 |
=2 |
11 |
5 |
6 |
919 |
=3 |
6 |
2 |
4 |
908 |
=4 |
25 |
8 |
17 |
902 |
=5 |
261 |
179 |
82 |
877 |
=6 |
125 |
101 |
24 |
616 |
=7 |
21 |
13 |
8 |
491 |
=8 |
58 |
36 |
22 |
470 |
=9 |
24 |
12 |
12 |
412 |
=10 | 13 | 4 | 9 | 388 |
* number of SNVs that have consensus score ≥ the cutoff values.