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Number of SNVs called by GATK-UGT with different cutoffs of genotype quality
| Cutoffs | SNVs | dbSNPs | Non-dbSNPs |
|---|---|---|---|
|
≥ 0 |
729 |
478 |
251 |
|
≥ 5 |
724 |
476 |
248 |
|
≥ 6 |
723 |
476 |
247 |
|
≥ 7 |
681 |
450 |
231 |
|
≥ 8 |
681 |
450 |
231 |
|
≥ 9 |
676 |
446 |
230 |
| ≥ 10 | 476 | 217 | 259 |
