Table 3.
de novo human genome chromosome 14 assemblies
| Assembly | Minia | ABySS | Velvet | |
|---|---|---|---|---|
| Value of k chosen |
47 |
31 |
31 |
31 |
| Number of contigs (k) |
48.5 |
56.1 |
51.9 |
45.6 |
| Longest contig (kbp) |
28.9 |
26.5 |
30.0 |
27.9 |
| Contig NG50 (kbp) |
2.8 |
1.7 |
2.0 |
2.3 |
| Large misassemblies |
11 |
3 |
20 |
385 |
| Local misassemblies |
25 |
27 |
158 |
867 |
| Coverage (%) |
92.4 |
81.9 |
82.2 |
84.4 |
| Unaligned contigs length (kbp) | 33.1 | 13.5 | 23.6 | 564.5 |
de novo human genome chromosome 14 assemblies reported by our assembler (Minia), compared to Velvet and ABySS assemblies from the GAGE benchmark. QUAST was used to evaluate all three assemblers.