Table 3.
Down-regulated gene functions in cell cultures at 12th passage as compared to cells at 4th passage
Class | Gene | Description | Functions | Ref |
---|---|---|---|---|
TP53 NODE |
TP53 |
Major tumor protein suppressor |
Cell cycle; Apoptosis; Senescence |
[41,42] |
UBE2D3 |
Member of E2 ubiquitin conjugating enzyme family |
Protein degradation machinery |
[43] |
|
MAP2K3 |
Protein kinase activated by environmental stress |
Gene expression regulation; Mitosis; Cellular differentiation; Cellular proliferation; Apoptosis; Senescence |
[44] |
|
ZHX1 |
Zing finger and homeoboxes gene family |
Maintenance of TP53 gene silencing |
[45] |
|
XPO1 |
Exportin 1 |
Protein trafficking; Localization of cyclin b; Localization of MPAK; Nuclear export of TP53 |
[46] |
|
PIN1 |
Phosphorylation-dependent prolyne isomerase |
Cellular differentiation; Cellular proliferation; Immune response; Mitosis |
[47,48] |
|
CDC27 |
Component of anaphase promoting complex |
Mitosis; Ubiquitination |
[49] |
|
ANAPC2 |
Anaphase promoting complex |
Cell cycle control; Ubiquitination |
[50] |
|
Cell cycle regulation and differentiation |
TYMS |
Thymidylate syntase |
DNA replication and repair; Mitosis |
[51] |
FGFR3 |
Fibroblast growth factor receptor 3 |
Mitosis; MSCs differentiation |
[52,53] |
|
NCAPD2 |
Subunit of condensin I |
Mitosis; Proliferation |
[54,55] |
|
MITF |
Transcription factor |
Cell cycle regulation; Gene expression; Differentiation |
[56-58] |
|
Oxidative stress response |
RPS3 |
Ribosomal protein (40s subunit) |
DNA damage repair; Kinase activity on NFkB complex |
[59] |
NFE2L2 |
Human basic leucine zipper transcription factor |
Oxidative stress response |
[60] |
|
HSP1 |
Heat-shock protein 1 |
Protein folding |
[61-63] |
|
NFkB signalling |
IKBKG |
Regulatory subunit of IKK complex |
NFkB activation |
[64] |
MYL5 |
Myosin light chain |
NFkB activation |
[65,66] |
|
Apoptosis |
SLC6A4 |
Membrane serotonin transporter |
Apoptosis |
[67] |
Histonic modification | HAT1 |
Histone acetyltransferase B |
Histone acetylation; Aging; Cellular differentiation |
[68] |
HIST1H3C | Member of Histone H3 family | Transcriptional regulation; Cellular differentiation | [69] |