Table 1. Deregulated protein-coding transcripts upon svRNA2-1a overexpression (in bold selected for rRT-PCR validation).
| Gene Name | F.C. svRNA2-1a vs (SCR +Ø) | adj.P.Val. svRNA2-1a vs (SCR +Ø) | F.C. SCR vs Ø | adj.P.Val. SCR vs Ø |
|---|---|---|---|---|
| A_33_P3237704 |
1.2330 |
0.2388 |
-1.0524 |
0.9999 |
| A_33_P3265941 |
1.2413 |
0.2475 |
-1.0052 |
0.9999 |
| A_33_P3365963 |
1.2523 |
0.2498 |
-1.0704 |
0.9999 |
| A_33_P3371144 |
1.2266 |
0.2475 |
-1.0810 |
0.9999 |
| A_33_P3391536 |
1.4585 |
0.2475 |
-1.0405 |
0.9999 |
| A_33_P3414017 |
1.2375 |
0.2475 |
-1.0293 |
0.9999 |
| APOL1 |
1.4084 |
0.2475 |
-1.1972 |
0.9999 |
| ATN1 |
1.2024 |
0.2475 |
-1.0583 |
0.9999 |
|
ATP1A3 |
1.2498 |
0.1248 |
-1.0403 |
0.9999 |
| C20orf141 |
1.2125 |
0.2475 |
-1.0716 |
0.9999 |
| C9orf173 |
1.2646 |
0.2475 |
-1.0650 |
0.9999 |
| CA6 |
1.4151 |
0.2475 |
-1.2019 |
0.9999 |
| CASKIN1 |
1.2015 |
0.2475 |
-1.0372 |
0.9999 |
| CDC14C |
1.2300 |
0.2475 |
-1.0771 |
0.9999 |
| CENPP |
1.2177 |
0.2201 |
1.0647 |
0.9999 |
| CHST6 |
1.2243 |
0.2475 |
-1.0706 |
0.9999 |
|
CRTC1 |
1.3100 |
0.1782 |
-1.1205 |
0.9999 |
| DKFZP547L112 |
1.3196 |
0.2475 |
-1.0859 |
0.9999 |
| ENST00000324659 |
1.2848 |
0.2475 |
-1.0479 |
0.9999 |
| ENST00000378223 |
1.2925 |
0.2475 |
1.0058 |
0.9999 |
| ENST00000390293 |
1.2509 |
0.2475 |
-1.0863 |
0.9999 |
| FLJ43860 |
1.2789 |
0.2475 |
-1.0507 |
0.9999 |
| GPSM1 |
1.2072 |
0.2475 |
-1.0222 |
0.9999 |
| GYPA |
1.2439 |
0.2475 |
1.0353 |
0.9999 |
| HBZ |
1.2560 |
0.2475 |
-1.0780 |
0.9999 |
| HIST1H2AM |
1.2034 |
0.2475 |
1.0679 |
0.9999 |
| HNRNPUL1 |
1.2248 |
0.2475 |
-1.0142 |
0.9999 |
| HOXA9 |
1.2020 |
0.2475 |
1.0048 |
0.9999 |
| IQSEC2 |
1.2369 |
0.2475 |
-1.0758 |
0.9999 |
| KCP |
1.2280 |
0.2475 |
-1.0651 |
0.9999 |
| KIRREL2 |
1.2357 |
0.2475 |
-1.0628 |
0.9999 |
|
LHX3 |
1.3588 |
0.2475 |
-1.0654 |
0.9999 |
| LOC100129196 |
1.2054 |
0.2201 |
-1.0215 |
0.9999 |
| LOC100132966 |
1.2777 |
0.2475 |
-1.0784 |
0.9999 |
| LOC388152 |
1.2027 |
0.2475 |
-1.0788 |
0.9999 |
| LY9 |
1.2376 |
0.2475 |
1.0250 |
0.9999 |
|
LYNX1 |
1.2769 |
0.2475 |
-1.0365 |
0.9999 |
| NKX1–2 |
1.2990 |
0.2475 |
-1.1392 |
0.9999 |
| NOBOX |
1.2333 |
0.2388 |
1.0089 |
0.9999 |
| OGFR |
1.2302 |
0.2475 |
-1.0343 |
0.9999 |
| OR5L2 |
1.2448 |
0.2475 |
-1.0622 |
0.9999 |
| OSCAR |
1.2536 |
0.2475 |
-1.0760 |
0.9999 |
| PLK1 |
1.2115 |
0.2475 |
1.0039 |
0.9999 |
| PRKAG3 |
1.2568 |
0.2419 |
-1.0628 |
0.9999 |
| SCGB3A1 |
1.2214 |
0.2475 |
-1.0600 |
0.9999 |
| SF3A2 |
1.2295 |
0.2475 |
-1.0376 |
0.9999 |
| SIGLEC15 |
1.3126 |
0.2475 |
1.0176 |
0.9999 |
| SLC34A3 |
1.2093 |
0.2475 |
-1.0674 |
0.9999 |
|
SNCB |
1.2263 |
0.2475 |
-1.0533 |
0.9999 |
| SP8 |
1.3189 |
0.2475 |
-1.1346 |
0.9999 |
| THBS1 |
1.2325 |
0.2475 |
-1.0773 |
0.9999 |
| TRIM3 |
1.2424 |
0.2475 |
-1.0716 |
0.9999 |
| TUBA3D |
1.2361 |
0.2475 |
1.0011 |
0.9999 |
| TUSC1 |
1.2405 |
0.2475 |
-1.0678 |
0.9999 |
| ZNF843 |
1.3978 |
0.2388 |
-1.0643 |
0.9999 |
| LCA5 |
-1.2092 |
0.2475 |
-1.0367 |
0.9999 |
| PURG |
-1.2425 |
0.2475 |
-1.1683 |
0.9269 |
|
SOX4 |
-1.2189 |
0.2475 |
-1.0349 |
0.9999 |
|
SPARCL1 |
-1.2608 |
0.2475 |
-1.0658 |
0.9999 |
| TRDMT1 |
-1.2119 |
0.2475 |
1.0271 |
0.9999 |
| TXNIP | -1.2608 | 0.2475 | -1.0013 | 0.9999 |
In bold, predicted targets for svRNA2-1a.