Table 2.
Chr | Location | Gene | Primers (5′-3′) | Amplicon Length (bp) | RTprimerDB ID | Standard Curve |
||||
---|---|---|---|---|---|---|---|---|---|---|
Slope | E (%) | r2 | Linear Dynamic Range (ng) | LOD (ng) | ||||||
1 | 172956826–172956929 | olfr16 | GAGTTCGTCTTCCTGGGATTC | 103 | 8651 | −2.904 | 120 | 0.997 | 0.84–13.5 | 0.09b |
TAATGATGTTGCCAGCCAGA | ||||||||||
7 | 98145342–98145482 | omp | GCCCACTTGATTCCCTGA | 140 | 8652 | −2.907 | 120 | 0.997 | 0.84–13.5 | 0.07 |
GCATCTGCTGGGTCAGGTCC | ||||||||||
8 | 83541895–83542057 | olfr370 | CACTATGGATGTGCCTCTTTTATCT | 162 | 8653 | −3.137 | 108 | 0.999 | 0.84–13.5 | 0.08 |
TACCCTATGAAGAGCTGATTTGAAG | ||||||||||
11 | 73395777–73395941 | olfr1 | TCTATGCCCTGTTCCTGGTC | 164 | 8654 | −3.439 | 95 | 0.996 | 0.84–13.5 | 0.02 |
CAACTTGGGCATTGTGACAG | ||||||||||
X | 78085543–78085693 | obp1a | GGATCAGAATTATGGATCATGTG | 150 | 8655 | −2.994 | 115 | 0.994 | 0.84–13.5 | 0.15 |
GATCATGAGAAGGGGAAGGA | ||||||||||
Y | 2663266–2663432 | sry | CTCATCGGAGGGCTAAAGTG | 166 | 8656 | −3.235 | 103 | 0.985 | 0.84–13.50 | 0.28c |
AAGCTTTGCTGGTTTTTGGA |
See also Figure S2.
MIQE guidelines compliant.
A LOD of 0.09 ng refers to about 150 cells when screening for autosomes.
A LOD of 0.28 ng refers to about 1,000 cells when screening for sex chromosomes (XO or XY).