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. 2013 Sep 26;1(4):350–359. doi: 10.1016/j.stemcr.2013.08.003

Table 2.

In Silico and Empirical Evaluation of the qPCR Primer Setsa

Chr Location Gene Primers (5′-3′) Amplicon Length (bp) RTprimerDB ID Standard Curve

Slope E (%) r2 Linear Dynamic Range (ng) LOD (ng)
1 172956826–172956929 olfr16 GAGTTCGTCTTCCTGGGATTC 103 8651 −2.904 120 0.997 0.84–13.5 0.09b
TAATGATGTTGCCAGCCAGA
7 98145342–98145482 omp GCCCACTTGATTCCCTGA 140 8652 −2.907 120 0.997 0.84–13.5 0.07
GCATCTGCTGGGTCAGGTCC
8 83541895–83542057 olfr370 CACTATGGATGTGCCTCTTTTATCT 162 8653 −3.137 108 0.999 0.84–13.5 0.08
TACCCTATGAAGAGCTGATTTGAAG
11 73395777–73395941 olfr1 TCTATGCCCTGTTCCTGGTC 164 8654 −3.439 95 0.996 0.84–13.5 0.02
CAACTTGGGCATTGTGACAG
X 78085543–78085693 obp1a GGATCAGAATTATGGATCATGTG 150 8655 −2.994 115 0.994 0.84–13.5 0.15
GATCATGAGAAGGGGAAGGA
Y 2663266–2663432 sry CTCATCGGAGGGCTAAAGTG 166 8656 −3.235 103 0.985 0.84–13.50 0.28c
AAGCTTTGCTGGTTTTTGGA

See also Figure S2.

a

MIQE guidelines compliant.

b

A LOD of 0.09 ng refers to about 150 cells when screening for autosomes.

c

A LOD of 0.28 ng refers to about 1,000 cells when screening for sex chromosomes (XO or XY).