Table 1.
Primer Pair | Locations in CRS | AnnealingTemperature(°C) | Polymorphisms at/in |
L29/H408 | 8–29/429–408 | 54 | HVS-II |
L394/H902 | 375–394/922–902 | 60 | +663HaeIII (663) |
L2796/H3274 | 2777–2796/3293–3274 | 57 | 3010, 3206 |
L3179/H3674 | 3160–3179/3693–3674 | 59 | +3391HaeIII (3394) |
L4499/H5099 | 4480–4499/5118–5099 | 60 | +4831HhaI (4833), 4715 |
L4887/H5442 | 4866–4887/5461–5442 | 56 | −5176 AluI (5178A), 5231, 5417 |
L7356/H7805 | 7337–7356/7824–7805 | 57 | −7598HhaI (7598, 7600) |
L8215/H8297 | 8196–8215/8316–8297 | 57 | 9-bp deletion |
L9794/H10164 | 9774–9794/10181–10164 | 60 | +9824 HinfI (9824) |
L10170/H10660 | 10147–10170/10679–10660 | 59 | 10171–10659 |
L11338/H11944 | 11319–11338/11963–11944 | 53 | 11719 |
L12334/H12878 | 12315–12334/12897–12878 | 57 | 12705, 12358, 12372 |
L14054/H14591 | 14035–14054/14610–14591 | 57 | 14178, 14308, 14318, 14470 |
L14575/H15086 | 14556–14575/15105–15086 | 57 | 14766 |
L15391/H16048 | 15372–15391/16067–16048 | 58 | 15487T, 15784 |
L15996/H16498 | 15975–15996/16517–16498 | 60 | HVS-I |
Note.— PCR conditions were 94°C for 2 min, for denaturation; 94°C for 40 s; annealing temperature shown for 1 min, for amplification; and 72 °C for 1 min, for 35–40 cycles; incubation at 72°C for 5 min.