Table 1.
Primers and PCR Conditions
Exon | Primers | AnnealingTemperature(°C) | Amplimer Size(bp) |
PR1 (−594/−431) | Forward: 5′-TGCAGCACCCAAGTGGAAATTC-3′ | 60 | 229 |
Reverse: 5′-TCATGCACCTCCTTTCCTGCAG-3′ | |||
PR2 (−510/−215) | Forward: 5′-TGATACTCCTGAGTTTCAT-3′ | 58 | 338 |
Reverse: 5′-AGCACCGCGAGATATCTAATAGC-3′ | |||
PR3 (−261/−55) | Forward: 5′-GTCGCCTAGGCAACAGGCGCG-3′ | 60 | 262 |
Reverse: 5′-TAGCCGCTGCTCTTCTTCATG-3′ | |||
PR4 (−68/+108) | Forward: 5′-GCAGGCGTGATGCGTAGTTC-3′ | 60 | 218 |
Reverse: 5′-GACTTGTCGATCTGCTCGAA-3 | |||
Exon 1 | Forward: 5′-CTGGCAGGCGTGATGCGTAG- 3′ | 68 | 300 |
Reverse: 5′-GATGTTCAAGCGGCCTAAGCG-3′ | |||
Exon 2 | Forward: 5′-GTCTTCCTCAGTGTCTGACGGTC-3′ | 68 | 192 |
Reverse: 5′-GCCTGCAGCAAAGGAAGAGC-3′ | |||
Exon 3 | Forward: 5′-TGTACACATTCAGCTTTTCC-3′ | 58 | 226 |
Reverse: 5′-TGAGGTGTGGATAACAGC-3′ | |||
Exon 4 | Forward: 5′-TCGTTAGCTGACTGCAGAAGG-3′ | 60 | 244 |
Reverse: 5′-ATGGTAACTATATGGAGTGG-3′ | |||
Exon 5 | Forward: 5′-TCATGAAGCTTGTGGGATGTGC-3′ | 60 | 316 |
Reverse: 5′-TGACATTAGGTAATATCACC-3′ | |||
Exon 6 | Forward: 5′-GAAGGTGACTCTGTGTGTAC-3′ | 64 | 349 |
Reverse: 5′-TCACAGCAGAGCAGGTAGAGGAGC-3′ | |||
Exon 7 | Forward: 5′-TGAGAATTGGACCTGGC-3′ | 62 | 283 |
Reverse: 5′-TACAACTGACAGCCTCCTTC-3′ | |||
Exon 8 | Forward: 5′-TGACAAACCAGCCGAAGTGAAC-3′ | 62 | 354 |
Reverse: 5′-TCAGTACCAGCGTGTGTTTC-3′ | |||
Exon 9 | Forward: 5′-GAGTACCCATCTCTGCCCTCTG-3′ | 62 | 324 |
Reverse: 5′-CAGATGCACCACAGAACTGAATCC-3′ | |||
Exon 10a | Forward: 5′-CATGAGGCGACAGCACTGC-3′ | 62 | 350 |
Reverse: 5′-CTTCCATTCCCAGTACTACCTGA-3′ | |||
3′ UTR A | Forward: 5′-AGGACGGTTGTAAGCAGTTGTT-3′ | 62 | 329 |
Reverse: 5′-GGAACCACAGCCAGTTTATGAT-3′ | |||
3′ UTR B | Forward: 5′-TCTCTGCTTACTAATGTGCCCC-3′ | 60 | 351 |
Reverse: 5′-TCAAGAGTGTCGACTTGGA-3′ | |||
3′ UTR C | Forward: 5′-TCTGGACATGATTTAGGGAAGC-3′ | 62 | 320 |
Reverse: 5′-TGCCGTGTTTTTCATGTTAAAA-3′ | |||
3′ UTR D | Forward: 5′-AAAGGGAACTGAAGACCTCCAC-3′ | 64 | 314 |
Reverse: 5′-GGAGGTTAAACCAGTACGTCCA-3′ | |||
3′ UTR E | Forward: 5′-ATTCTGAGCTGGCTTGTTGTTT-3′ | 62 | 234 |
Reverse: 5′-GGTTTATTCCATGGCCATTGTA-3′ | |||
Intron 9 A | Forward: 5′-CTGGTCAACATGTGCGTGG-3′ | 62 | 267 |
Reverse: 5′-CTTGGGACCAGAGGGCTC-3′ | |||
Intron 9 B | Forward: 5′-TTAAGGATCGATGCACTGGG-3′ | 62 | 324 |
Reverse: 5′-TTGGGATTCCTTCCCTGGG-3′ | |||
Intron 9 C | Forward: 5′-CCTTAGGTGATGTAATCAGCC-3′ | 62 | 350 |
Reverse: 5′-AGGCCTCGAGGACACCC-3′ | |||
Intron 9 D | Forward: 5′-CCTGTGACAGCCATCTTGC-3′ | 62 | 327 |
Reverse: 5′-CATCTGATGTACTCAGATGCC-3′ | |||
Intron 9 E | Forward: 5′-ACTAGCCTCAGAGCTCTGG-3′ | 58 | 348 |
Reverse: 5′-GTGGAGGTGGAGTGGAGG-3′ |
Proximal region of the 3′ UTR.