Table A3.
Primers | Sequence(5′→3′) | Size(bp) | Comments |
1020849-F | CAGCTTGGATGTGCTGCATGG | SNP (data not shown) | |
1020849-R | ACTGCATATGTACCTGATCCTG | 280 | SNP (data not shown) |
1020850-F | CATTTGCTCTAGCCACAGATGG | SNP (data not shown) | |
1020850-R | CTGTCAAACTTTGATGACTCGG | 145 | SNP (data not shown) |
1157761-F | CCCACACCACCTCATGTCACC | SNP (data not shown) | |
1157761-R | GTTTGGTCAGATGTTCTCCAAACC | 215 | SNP (data not shown) |
12410-CA-F | TCAGTTAAGACTTTTATAGCTGTTGG | STRP (fig. 6) | |
12410-CA-R | GCTTTGCTGACTACAGATCTTAG | 136 | STRP (fig. 6) |
12410-GT-F | TATGGTAAGTGAGATTTCTAAAAACC | STRP (fig. 6) | |
12410-GT-R | CCATTTTCCTATCCACCAGCTCC | 303 | STRP (fig. 6) |
13646-ATTT-F | TGGGAAAATGCCCATGAGATTCC | STRP (fig. 6) | |
13646-ATTT-R | GTTATGATAGAATCTACAGTCAACTC | 158 | STRP (fig. 6) |
13646-CTTT-F | ACTGTCAATATCTGTTCACTTAATGG | STRP (fig. 6) | |
13646-CTTT-R | AATAAATACTTTTGAACTCAAATACAGG | 223 | STRP (fig. 6) |
13646-GTT-F | GAGTACTTGGGTTATGTGTGTCGG | STRP (fig. 6) | |
13646-GTT-R | ATATAACTTATAATTATATGTAATCATTATG | 158 | STRP (fig. 6) |
13646-TA-F | TGGCTTGGGGTCTGTAGATCTTC | STRP (fig. 6) | |
13646-TA-R | GAAGACATAGTGTTTATCTTAGTTCC | 198 | STRP (fig. 6) |
13707-AAAT-F | GGAAGTGTAATATGAGCCTTTGGG | STRP (fig. 6) | |
13707-AAAT-R | CAGTGGTTATTCTGTTGTTTGTTTGG | 121 | STRP (fig. 6) |
13707-ATCT-F | TGGCTCTCAAAGCTGGCCACGG | STRP (fig. 6) | |
13707-ATCT-R | CACATGGACGCACATGAAAGATAG | 177 | STRP (fig. 6) |
1381019-F | TCAAGGTATTGCTAAAAGTCCTGG | SNP (data not shown) | |
1381019-R | AAATAGGGTCAGTCCAACACAGG | 190 | SNP (data not shown) |
1381020-F | ATAAATCTCAGTGGTTTTTGAAAAGG | SNP (data not shown) | |
1381020-R | TTTAAGGGATTATAATGCTGGATGG | 275 | SNP (data not shown) |
1381022-F | CTAGCACAACGCCTACAAGTGG | SNP (data not shown) | |
1381022-R | TGGCTAATAATGTGTCCTCTATGG | 240 | SNP (data not shown) |
1461001-F | TTTGTCCAAAGACTTGTGCCAGG | SNP (data not shown) | |
1461001-R | AGATACAACCAATAATATGGCTGTG | 210 | SNP (data not shown) |
1461002-F | GAATAAAGGCAAGAATTGCTTCACG | SNP (data not shown) | |
1461002-R | GGCTGCAACTGCCCTGTCCG | 250 | SNP (data not shown) |
1461003-F | AGCTCTGTGTCATTCATTAGTAGC | SNP (data not shown) | |
1461003-R | CAAACTACACTTGTACCCTGACC | 180 | SNP (data not shown) |
1499456-F | AAAGTGAATAGCAAAACCACAGCC | SNP (data not shown) | |
1499456-R | AAGGCAGTCTAACGTTACATTTCC | 240 | SNP (data not shown) |
1499457-F | TACATGTCATACATGACATACACC | SNP (data not shown) | |
1499457-R | GGCAGTCTAACGTTACATTTCC | 200 | SNP (data not shown) |
1550705-F | CAAAGGACTGTGGTGCATTTCC | SNP (data not shown) | |
1550705-R | TTTTCCTTCAGCACACTTAAGCC | 179 | SNP (data not shown) |
16080-GT-F | TGTCCTCTAGTTCCATCTAAGTGG | STRP (data not shown) | |
16080-GT-R | GTCCCCGTCAATGGATGAGTGG | 147 | STRP (data not shown) |
16080-TA-F | GTGTTCTCCCATTGAATTGAAAAGG | STRP (data not shown) | |
16080-TA-R | TGCTCCAAACACTTCTCTGCTGG | 246 | STRP (data not shown) |
17045-F | AGCTAACTCCCTCAATTGGCCA | SNP (data not shown) | |
17045-R | TGCTCTAATAACTAGCAGGCTGG | 147 | SNP (data not shown) |
26261-CT-F | CGTCTTATCGTAACCTAAGGTGCC | STRP (fig. 6) | |
26261-CT-R | CTAATTTGGTATCTGTTTAATATGTTCC | 218 | STRP (fig. 6) |
305301-F | GTTATTTGCTTAGCCCTGGATCC | SNP (data not shown) | |
305301-R | GGAGGAACAGACATATGTATACC | 294 | SNP (data not shown) |
305347-F | AAAAAGAATATCATACTTCTACTCTC | SNP (data not shown) | |
305347-R | AACTTGGGTCAACACTCTCTCC | 237 | SNP (data not shown) |
305350-F | ATTGAGACTACCCCATATTCAGG | SNP (data not shown) | |
305350-R | GTCATGGAAACACTATAAGTCCTG | 185 | SNP (data not shown) |
305361-F | GTTCACTATAGTCAACTGTGACC | SNP (data not shown) | |
305361-R | GGTCATGAGAATTGATCTGGCTC | 192 | SNP (data not shown) |
305365-F | GGTGATACACACTGGCAGTTCC | SNP (data not shown) | |
305365-R | TTCAGAGTCTCTCAGCAGGACC | 298 | SNP (data not shown) |
305369-F | TGAGGTGTTATAGAAAGAGTATGAG | SNP (data not shown) | |
305369-R | TTCCTGTGTCCATGATAGAATGG | 228 | SNP (data not shown) |
8104-CCCT-F | TTACAATTCAGCAATAGTACTTGTTAG | STRP (fig. 6) | |
8104-CCCT-R | CACGGCACGTAACTTGGCAAATG | 162 | STRP (fig. 6) |
8104-TG-F | AGGACAGCAGTGGTGTCCTGG | STRP (fig. 6) | |
8104-TG-R | AGATATTAAGAGAGACAAAATGCTAAG | 125 | STRP (fig. 6) |
990663-F | GAAAGAGCATCGGTTCTTGATGG | SNP (data not shown) | |
990663-R | GTTCTGAATGCCTTTACGTGTGG | 175 | SNP (data not shown) |
AFM175xb4a | GAGAACTAATCCCTTCTGGC | STRP (data not shown) | |
AFM175xb4m | AGCTTCATAAAGAGTCTGGAAAAT | 192 | STRP (data not shown) |
D8S272-2F | CTTATGACATAATGAAACTCAACC | Alternate primer for D7S272 | |
D8S272-2R | ATAACAAAATGCTATTGAGTTCTTCC | 224 | Alternate primer for D7S272 |
D8S272-3F | AGCTTCATAAAGAGTCTGGAAAAT | Alternate primer for D7S272 | |
D8S272-3R | CACACACTCTTACACACAACGG | 221 | Alternate primer for D7S272 |
Note.— All sequences are in contig NT_008104.5.