Table A4.
Primers | Sequence(5′-3′) | Size(bp) | Comments |
1190556-F | AACACTCCTTTATCTAAAGAGTCG | SNP (data not shown) | |
1190556-R | TAATTAGCAACGGACCTTACACC | 510 | SNP (data not shown) |
1382608-F | GTCTACCATGACTGTCCGAGG | SNP (fig. 8) | |
1382608-R | CCATGCTTCAGGCCAATACAGG | 199 | SNP (fig. 8) |
1440290-F | AAAGATGCCAAGTCTTCCATTCC | SNP (data not shown) | |
1440290-R | CCACATTTGAACGGCATCACATC | 912 | SNP (data not shown) |
1455635-F | GAGGATACAAGGGACTCTGTAC | SNP (data not shown) | |
1455635-R | AGGAGAATGGGTCTTTTTCACC | 430 | SNP (data not shown) |
1455638-F | CTATCTTCAGTTTTTTTGAGGAACC | SNP (fig. 8) | |
1455638-R | GCAAAAGCAGGGCACTACATCC | 249 | SNP (fig. 8) |
1455641-F | TCCTTTATGCTCCTCCAAACAGG | SNP (data not shown) | |
1455641-R | CATTGTTATCAATGCACTCCTAGG | 280 | SNP (data not shown) |
1455642-F | TTCCACCTCATGGCTCGTACC | SNP (data not shown) | |
1455642-R | ATTACAAATTTGGACTGGAACCTC | 292 | SNP (data not shown) |
1457445-F | TTGGTTATTGAGATTTGTGAAATTC | SNP (data not shown) | |
1457445-R | TTTTACTGCTTCAGGTATCACAC | 300 | SNP (data not shown) |
1457450-F | CTCTATCCAACGCTGTCTTTGG | SNP (data not shown) | |
1457450-R | ATCATAAATAACATTAGATTGACATG | 310 | SNP (data not shown) |
153108-F | TAGCAACAAAAGCTGTACTTTTGG | SNP (data not shown) | |
153108-R | GTGAGAAAACCATAATCATTCCATG | 312 | SNP (data not shown) |
1625100-F | AAGCCTGCTGAGATTACTACACC | SNP (data not shown) | |
1625100-R | ACCAGCCCCAATGAGACGAACC | 240 | SNP (data not shown) |
1677799-F | AAGACACGGGAGACCTCATTGG | SNP (data not shown) | |
1677799-R | GACTGTGTGACGGAACCACAGG | 185 | SNP (data not shown) |
1824863-F | GTTAATGAGCATGTGTATGTCAC | SNP (fig. 8) | |
1824863-R | GCGCTTCGGGATATGTTGTCC | 320 | SNP (fig. 8) |
1870118-F | GAGGTACGGGCTTCTGAGAGG | SNP (data not shown) | |
1870118-R | GAACAGAGACCTGAACCCTGG | 427 | SNP (data not shown) |
1871320-F | CTGAGAAACATGACCTTTCATCC | SNP (data not shown) | |
1871320-R | CAGACAGCAGACAGGGTATCC | 282 | SNP (data not shown) |
1947488-F | CAGAGTGATGGAGCATGCAACC | SNP (data not shown) | |
1947488-R | TTGGACTTCTGTTGCCTCATCC | 451 | SNP (data not shown) |
2119237-F | AAATCACTTGGTGAAGATATCCAC | SNP (fig. 8) | |
2119237-R | CCAGTGGCAGGTCCTGACTC | 214 | SNP (fig. 8) |
22257-ATCT-F | GAGTTTATGAACCATGCTCAAGG | STRP (fig. 8) | |
22257-ATCT-R | TATATACAGAAAAATAGATAGTAGAGG | 201 | STRP (fig. 8) |
22257-comp-F | GGCTCTTACATTCTCTAATACTATGGG | STRP (data not shown) | |
22257-comp-R | GAAGCTATTCTGTGAGTTTATGTGTGG | 976 | STRP (data not shown) |
767271-F | TGTCCATGGTTTGCTGAGTTCC | SNP (data not shown) | |
767271-R | ACCTCCAGGAATTCGCAGTCC | 332 | SNP (data not shown) |
8087-GT-F | TGGTCAATGTAATCAGTGTAACTGG | STRP (data not shown) | |
8087-GT-R | AATGGGTATATGTGAGTACATAGAC | 210 | STRP (data not shown) |
8152018-CA-F | CTGATCCTAATTAATAGAAAGCAACC | STRP (fig. 8) | |
8152018-CA-R | AATCACTGTACCTTGTTACTTGACC | 201 | STRP (fig. 8) |
897445-F | CCTTACCTGTTAGCATCTGTTGG | SNP (fig. 8) | |
897445-R | GATTAGAAACCATGATAGCTCTTGG | 188 | SNP (fig. 8) |
899397-F2 | CCGCTGCCTTTATTCAACTTCTC | SNP (data not shown) | |
899397-R | ATATGACCTAATAGTAATCATAACTC | 280 | SNP (data not shown) |
899410-F | TGCATTCTTACCATCAAAAGTCC | SNP (fig. 8) | |
899410-R | TACGGTCTGCGGTTTACTGCC | 488 | SNP (fig. 8) |
899411/3-F | GAAGAGTCCTAAGTTTAGAGTCC | SNP (data not shown) | |
899411/3-R | AGCCTGGGACACCGTGTCAC | 294 | SNP (data not shown) |
922501-F | GCATTCTGTTCAAACTAATATCAGG | SNP (fig. 8) | |
922501-R | GTCCATTATAAAGGCATTTCAAAGAG | 198 | SNP (fig. 8) |
930843-F | TCTTCTAAGCTGAGCTCATCGC | SNP (data not shown) | |
930843-R | GGTTCACCGTTATTTCCTAGTCC | 794 | SNP (data not shown) |
936553-F | AGTGCCCAATACACGTAAATGTG | SNP (fig. 8) | |
936553-R | TGTACTGTCAAAATGAAGGCTCG | 780 | SNP (fig. 8) |
958660-F | GACTGACTTGTGTCTCCTCTACC | SNP (fig. 8) | |
958660-R | CTCCCCTTTGTGTAAGGTCACC | 180 | SNP (fig. 8) |
AFM143xd8a | ACATCTGCGTCGTCTTCATA | STRP (data not shown) | |
AFM143xd8m | CCAACACCTGAGTCAGCATA | 121 | STRP (data not shown) |
D8S264-2F | TTGGGGAGGCAAAGTGCTCC | Alternate primer for D7S264 | |
D8S264-2R | GAGAAGATGTGAATGGGAAAGCC | 200 | Alternate primer for D7S264 |
D8S264-3F | GGCCTCCTGGGAGATTCGG | Alternate primer for D7S264 | |
D8S264-3R | CCGGCAGGACTGAGCGTGG | 224 | Alternate primer for D7S264 |
Note.— All sequences are in contig NT_008087.5.