Table 1.
Key | Software | Configuration parameters |
---|---|---|
DESeqPgO |
DESEq |
method=~pooled~, sharingMode=~per-condition~ |
DESeqPmax |
DESEq |
method=~pooled~, sharingMode=~maximum~ |
DESeqCgO |
DESEq |
method=~per-condition~, sharingMode=~per-condition~ |
DESeqCmax |
DESEq |
method=~per-condition~, sharingMode=~maximum~ |
edgeRdf20 |
edgeR |
common/trended/tagwise moderation regime with prior.df=20 (default) |
edgeRdf1 |
edgeR |
common/trended/tagwise moderation regime with prior.df=1 |
edgeRqlfDf20 |
edgeR |
common/trended/tagwise moderation regime with prior.df=20 (default) and quasi-likelihood F-tests |
edgeRqlfDf1 | edgeR | common/trended/tagwise moderation regime with prior.df=1 and quasi-likelihood F-tests |