Table 2.
Correlation coefficients of transcriptome profiles among RNA-seq samples
| T1 | T2 | T3 | T1-1 | T2-1 | T3-1 | CK1 | CK2 | CK3 | CK1-1 | CK2-1 | CK3-1 | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| T1 |
1 |
0.98 |
0.97 |
0.98 |
0.96 |
0.96 |
0.54 |
0.58 |
0.57 |
0.55 |
0.58 |
0.58 |
| T2 |
0.98 |
1 |
0.99 |
0.98 |
0.99 |
0.98 |
0.57 |
0.59 |
0.59 |
0.58 |
0.6 |
0.6 |
| T3 |
0.97 |
0.99 |
1 |
0.97 |
0.98 |
0.99 |
0.58 |
0.61 |
0.61 |
0.59 |
0.62 |
0.62 |
| T1-1 |
0.98 |
0.98 |
0.97 |
1 |
0.99 |
0.98 |
0.5 |
0.53 |
0.52 |
0.51 |
0.54 |
0.54 |
| T2-1 |
0.96 |
0.99 |
0.98 |
0.99 |
1 |
0.99 |
0.53 |
0.55 |
0.55 |
0.54 |
0.56 |
0.56 |
| T3-1 |
0.96 |
0.98 |
0.99 |
0.98 |
0.99 |
1 |
0.55 |
0.57 |
0.57 |
0.56 |
0.58 |
0.59 |
| CK1 |
0.54 |
0.57 |
0.58 |
0.5 |
0.53 |
0.55 |
1 |
1 |
1 |
1 |
0.99 |
0.99 |
| CK2 |
0.58 |
0.59 |
0.61 |
0.53 |
0.55 |
0.57 |
1 |
1 |
1 |
0.99 |
1 |
1 |
| CK3 |
0.57 |
0.59 |
0.61 |
0.52 |
0.55 |
0.57 |
1 |
1 |
1 |
0.99 |
0.99 |
1 |
| CK1-1 |
0.55 |
0.58 |
0.59 |
0.51 |
0.54 |
0.56 |
1 |
0.99 |
0.99 |
1 |
1 |
0.99 |
| CK2-1 |
0.58 |
0.6 |
0.62 |
0.54 |
0.56 |
0.58 |
0.99 |
1 |
0.99 |
1 |
1 |
1 |
| CK3-1 | 0.58 | 0.6 | 0.62 | 0.54 | 0.56 | 0.59 | 0.99 | 1 | 1 | 0.99 | 1 | 1 |
T1, T2, T3: dehydration treated samples sequenced at 100 bp.
T1-1, T2-1, T3-1: dehydration treated samples sequenced at 50 bp.
CK1, CK2, CK3: control samples sequenced at 100 bp.
CK1-1, CK2-1, CK3-1: control samples sequenced at 50 bp.