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. 2013 Sep 30;45(1):36. doi: 10.1186/1297-9686-45-36

Table 4.

Results of single-QTL analysis

Trait GGA Loc (cM) CI (cM) Nearest markers SL QTL effect HS Ref
ShD
 1
 80.5
 76 - 85
 rs14803813 - rs14805816
 *
 0.59 ± 0.17
 3
 -
IGF-I
 1
 149.5
 141 - 153
 rs13870138 - RBL3072
 ***, $
 0.55 ± 0.10
 4
 [26,27]
ThP
 1
 159.5
 150 - 165
 rs14831825 - rs14833110
 *
 0.52 ± 0.11
 3
 -
BMW min
 2
 234
 232 - 240
 rs14231442 - rs14231751
 ***, $
 0.69 ± 0.54
 2
 -
Tb
 2
 263
 256 - 267
 rs13730256 - rs14246372
 *
 0.62 ± 0.46
 2
 -
BW7
 3
 97
 92 - 100
 rs14334468 - rs15316026
 *
 0.62 ± 0.18
 2
 -
ShL
 3
 174
 163 - 180
 rs14378036 - rs15394046
 *
 0.44 ± 0.15
 4
 -
Glucose
 3
 189
 184 - 194
 rs15406274 - rs14385386
 *
 0.47 ± 0.19
 4
 -
BW5
 3
 250
 247 - 257
 rs15452125 - rs14410153
 *
 0.65 ± 0.26
 3
 [28]
BMW maj
 4
 22
 16 - 30
 rs14421644 - rs14423272
 *
 0.42 ± 0.16
 4
 -
BMP
 4
 22
 16 - 28
 rs14421644 - rs14423272
 *
 0.49 ± 0.16
 3
 -
BW7
 4
 159
 145 - 166
 rs14707369 - rs14492188
 *
 0.60 ± 0.11
 2
 [29]
BW5
 4
 160
 149 - 166
 rs14492188 - rs13664708
 *
 0.57 ± 0.20
 2
 [30]
Tb
 5
 119.9
 119 - 121
 rs15730058 - rs15731150
 ***, $
 0.75 ± 0.52
 2
 -
ThW
 6
 79
 71 - 82
 rs15806906 - rs14588414
 *
 0.45 ± 0.27
 3
 -
ThP
 6
 79
 72 - 82
 rs15806906 - rs14588414
 *
 0.57 ± 0.23
 2
 -
Glucose
 7
 4
 0 - 13
 rs15824390 - rs13739121
 *
 0.42 ± 0.09
 4
 -
BMW min
 7
 34
 31 - 56
 rs14605238 - rs14605963
 *
 1.03
 1
 [31]
BMW maj
 7
 39
 30 - 66
 rs14606550 - rs15844013
 *
 0.49 ± 0.27
 3
 [31]
BMP
 7
 39
 31 - 58
 rs14606550 - rs15844013
 *
 0.49 ± 0.35
 3
 -
ThW
 8
 5.9
 0 - 13
 RBL4827 - rs14635367
 *
 0.50 ± 0.19
 3
 -
ThP
 8
 62.9
 56 - 77
 rs15925157 - rs15927400
 **
 0.47 ± 0.33
 3
 -
BMWmin
 9
 62
 57 - 69
 rs15977388 - rs15978241
 *
 0.42 ± 0.19
 4
 -
BMWmaj
 9
 66
 59 - 82
 rs14677393 - RBL2391
 *
 0.65 ± 0.07
 2
 -
BMP
 9
 66
 61 - 70
 rs14677393 - RBL2391
 ***, $
 0.55 ± 0.24
 3
 -
AFP
 10
 59.8
 56 - 68
 rs14009177 - MCW0035
 *
 0.60 ± 0.17
 2
 -
AFW
 10
 62.8
 56 - 75
 rs14009888 - rs14010538
 *
 0.65 ± 0.02
 2
 -
Tb
 11
 36
 31 - 44
 rs14025158 - rs15617411
 **
 0.44 ± 0.11
 4
 -
Glucose
 18
 30.2
 23 - 38
 rs14110229 - ADL0184
 ***, $
 0.52 ± 0.19
 4
 -
ShD
 19
 18
 0 - 22
 rs14116183 - rs15837334
 ***, $
 0.54 ± 0.16
 3
 -
BMW min
 19
 41
 35 - 49
 rs14120685 - RBL1230
 *
 0.47 ± 0.01
 2
 -
AFW
 19
 52
 48 - 53
 rs15855444 - rs14124107
 ***, $
 0.52 ± 0.27
 3
 [32]
AFP
 19
 52
 47 - 53
 rs15855444 - rs14124107
 ***, $
 0.52 ± 0.25
 3
 [32]
BW5
 20
 3.3
 1 - 6
 LEI0080 - rs14268358
 *
 0.60 ± 0.18
 3
 -
BW7
 20
 3.3
 1 - 6
 LEI0080 - rs14268358
 *
 0.60 ± 0.12
 3
 -
AFW
 20
 51.3
 29 - 52
 rs16175432 - rs14280613
 *
 0.60 ± 0.09
 2
 -
AFP
 20
 51.3
 28 - 52
 rs16175432 - rs14280613
 *
 0.59 ± 0.09
 2
 -
NEFA
 21
 34
 31 - 36
 RBL2361 - rs15184064
 *
 0.54 ± 0.19
 4
 -
AFW
 26
 45
 18 - 46
 rs16204669 - ADL0285
 *
 0.45 ± 0.12
 3
 -
ShD
 27
 28
 19 - 36
 RBL2860 - rs14303776
 *
 0.46 ± 0.32
 3
 -
ShL
 27
 32
 18 - 40
 rs14303776 - RBL4014
 *
 0.51 ± 0.22
 3
 -
ThP
 27
 48
 33 - 53
 ADL0376 - RBL10518
 *
 0.60 ± 0.18
 3
 -
AFW
 27
 51
 47 - 53
 ADL0376 - RBL10518
 *
 0.55 ± 0.25
 3
 -
AFP
 27
 51
 47 - 53
 ADL0376 - RBL10518
 **
 0.50 ± 0.26
 4
 [33]
ShL
 28
 41
 28 - 51
 MCW0227 - rs13726077
 *
 0.59 ± 0.19
 2
 -
BMP
 28
 51
 47 - 51
 rs14307413 - rs16212250
 *
 0.45 ± 0.25
 3
 -
BMW min Z 88.9 86 - 99 RBL3035 - rs16110306 ***, $ 0.59 ± 0.32 4 -

Traits are described in Table 1; GGA Gallus gallus chromosome, Loc location, CI confidence interval, SL significance level with * at 5%, ** at 1%, *** at 0.1% chromosome-wide and $ at 5% genome-wide, QTL effect substitution effect expressed in residual standard deviation. HS number of heterozygous sires out of 5. Ref publications describing similar QTL affecting the same trait and presenting a similar genomic location.