Table 5.
Details of the SCNN1 gene family members and SNPs selected
| Gene | Gene location | No. of SNPs1 | SNP rs#. | SNP location (Chr: bp) | Mutations type | Major allele (Fre)2 |
|---|---|---|---|---|---|---|
| SCNN1a |
chr1: 80,034,908-80,045,394 |
2 |
rs14845039 |
1:80035441 |
Synonymous coding (C/T) |
T(0.71) |
| |
|
rs13886292 |
1:80039016 |
Intronic (G/C) |
G(0.82) |
|
| SCNN1b |
chr14: 7,002,221-7,011,192 |
6 |
rs13532836 |
14:7005977 |
Intronic (A/G) |
C(0.74) |
| |
|
rs13532838 |
14:7007309 |
Synonymous coding (A/G) |
T(0.51) |
|
| |
|
rs14075350 |
14:7011699 |
5’UTR (C/T) |
C(0.68) |
|
| |
|
|
rs13532842 |
14:7011842 |
Intronic (A/G) |
A(0.64) |
| |
|
|
rs15731904 |
14:7003218 |
Intronic (A/G) |
G(1.00) |
| |
|
|
rs15731913 |
14:7006347 |
Intronic (C/G) |
NA |
| SCNN1d |
chr21: 2,435,983- 2,440,820 |
4 |
rs14282978 |
21:2436106 |
Synonymous coding (C/T) |
T(0.95) |
| |
|
rs15181931 |
21:2438805 |
Intronic (T/G) |
C(0.72) |
|
| |
|
rs15181934 |
21:2442772 |
5’UTR (G/A) |
T(0.57) |
|
| |
|
|
rs14282986 |
21:2437824 |
Intronic (A/G) |
T(0.70) |
| SCNN1g |
chr14: 7,019,365- 7,028,441 |
7 |
rs10730783 |
14:7018929 |
3’UTR (A/G) |
G(0.82) |
| |
|
rs15009191 |
14:7019233 |
3’UTR (A/G) |
C(0.83) |
|
| |
|
rs15009198 |
14:7022273 |
Intronic (A/G) |
C(0.77) |
|
| |
|
|
rs15009204 |
14:7023020 |
Intronic (A/C) |
T(0.57) |
| |
|
|
rs15009207 |
14:7027589 |
Intronic (A/G) |
T(0.56) |
| |
|
|
rs15009209 |
14:7027788 |
Intronic (A/G) |
T(0.57) |
| rs14075352 | 14:7019820 | Intronic (C/G) | C(0.90) |
1No. of SNPs = the number of SNPs selected in each gene. All SNP positions were reported based on the reference chicken genome (Genome assembly: WASHUC2).
2Major allele and its frequency; NA means that the allele was not detected.