Table 1. Summary of chlamydial and human unique mapped reads at (a) 1 hpi and (b) 24 hpi.

(a)	Mapped Reads
Condition (1 hpi)	Chlamydia	(%)	Human	(%)	Total Unique Mapped Reads
Mock-infected	0	0.00	88,361,892	100.00	88,361,892
Chlamydia-infected replicate 1	11,436	0.01	80,639,860	99.99	80,651,296
Chlamydia-infected replicate 2	36,602	0.02	166,631,650	99.98	166,668,252
Chlamydia-infected replicate 3	83,854	0.02	352,554,875	99.98	352,638,729
Chlamydia-infected replicate 4	nd		114,708,905	99.98	114,709,004.98
Total (infected)	131,892	0.02	714,535,284	99.98	714,667,176
Total (mock + infected)	131,892		802,897,716		803,029,608