Table 3.

The influence of balancing parameters on the alignment

θ 1	θ 2	θ 3	nEdge	nOrth
1	0	0	45	16
0	1	0	54	9
0	0	1	53	10
0.9	0.1	0	57	16
0.5	0.5	0	50	16
0.1	0.9	0	56	12
0.9	0	0.1	54	16
0.5	0	0.5	47	16
0.1	0	0.9	50	12
0	0.9	0.1	52	10
0	0.5	0.5	52	10
0	0.1	0.9	54	10
0.9	0.09	0.01	58	16
0.9	0.05	0.05	43	16
0.9	0.01	0.09	51	16

nEdge denotes the number of aligned matched edges; nOrth denotes the number of aligned orthologous pairs.