Table 6.
Differences of nucleotide and deduced amino acid sequences between the porcine-like bovine K5 and porcine K71 strains, and between the bovine K5 and other porcine and porcine-like bovine strains.
| Strain | Species |
VP1 |
VP2 |
VP3 |
VP4 |
NSP2 |
NSP3 |
NSP5 |
||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| R1 | C1 | M1 | P[7] | N1 | E1 | H1 | ||||||||
| |
|
377a |
2154 |
830 |
1063 |
1845 |
923 |
55 |
522 |
763 |
815 |
64 |
1032 |
7 |
| (120)b |
(712) |
(272) |
(349) |
(599) |
(305) |
(3) |
(159) |
(239) |
(257) |
(13) |
(3'UTR)e |
(5'UTR)f |
||
| K5 |
Bovine |
G(R)c |
T(I) |
T(S) |
A(L) |
G(S) |
G(C) |
A(E) |
T(F) |
T(D) |
T(F) |
C(S) |
G |
A |
| K71 |
Porcine |
A(Q) |
G(M) |
C(P) |
C(F) |
A(N) |
A(Y) |
G(E) |
C(S) |
C(D) |
C(L) |
T(S) |
A |
T |
| PRG942 |
Porcine |
A(Q) |
T(I) |
C(P) |
A(L) |
A(N) |
–d |
G(E) |
T(F) |
T(D) |
T(F) |
T(S) |
A |
T |
| PRG9121 |
Porcine |
A(Q) |
T(I) |
C(P) |
A(L) |
A(N) |
A(Y) |
G(E) |
T(F) |
C(D) |
T(F) |
T(S) |
A |
T |
| YM |
Porcine |
A(K) |
T(I) |
C(P) |
A(L) |
A(N) |
A(Y) |
G(E) |
T(F) |
T(D) |
T(F) |
A(S) |
A |
T |
| Gottfried |
Porcine |
A(Q) |
T(I) |
C(P) |
A(L) |
A(N) |
– |
G(E) |
T(F) |
T(D) |
T(F) |
T(S) |
A |
A |
| OSU |
Porcine |
A(Q) |
T(I) |
T(S) |
A(L) |
A(N) |
A(Y) |
G(E) |
T(F) |
T(D) |
T(F) |
T(S) |
A |
T |
| A131 |
Porcine |
A(K) |
T(I) |
– |
– |
A(N) |
A(Y) |
G(E) |
T(F) |
T(D) |
T(F) |
T(S) |
A |
T |
| A253 |
Porcine |
A(K) |
T(I) |
– |
– |
A(N) |
A(Y) |
G(E) |
T(F) |
T(D) |
T(F) |
T(S) |
A |
T |
| K8 | Bovine | * g | * | * | * | * | * | G(E) | T(F) | T(D) | T(F) | T(S) | A | T |
a Number of nucleotide site. b Number of amino acid site. c Nucleotide (amino acid) changes unique to K5 strain.d Genotype is different from the mentioned above. e 3′ untraslated region. f 5′ untraslated region. g Sequence unavailable.