Table 3.

Five-fold cross validation comparison of MHC2SKpan and NetMHCIIpan-2.0 on NielsenSet3. For each allele, we display the largest value in boldface.

		AUC			PCC
allele	count	TEPITOPEpan	NetMHCIIpan-2.0	MHC2SKpan	TEPITOPEpan	NetMHCIIpan-2.0	MHC2SKpan
DRB1*01:01	7685	0.731	0.846	0.845	0.433	0.711	0.702
DRB1*03:01	2505	0.718	0.864	0.853	0.346	0.709	0.672
DRB1*03:02	148	0.603	0.757	0.755	0.227	0.525	0.447
DRB1*04:01	3116	0.765	0.848	0.840	0.438	0.670	0.647
DRB1*04:04	577	0.758	0.818	0.816	0.496	0.630	0.622
DRB1*04:05	1582	0.783	0.858	0.869	0.491	0.698	0.703
DRB1*07:01	1745	0.781	0.864	0.872	0.533	0.740	0.742
DRB1*08:02	1520	0.650	0.780	0.784	0.294	0.526	0.532
DRB1*08:06	118	0.870	0.924	0.912	0.602	0.796	0.749
DRB1*08:13	1370	0.747	0.885	0.896	0.337	0.746	0.760
DRB1*08:19	116	0.714	0.808	0.831	0.537	0.608	0.623
DRB1*09:01	1520	0.683	0.818	0.826	0.340	0.634	0.638
DRB1*11:01	1794	0.797	0.883	0.877	0.514	0.777	0.764
DRB1*12:01	117	0.831	0.892	0.876	0.627	0.764	0.754
DRB1*12:02	117	0.843	0.900	0.898	0.640	0.769	0.762
DRB1*13:02	1580	0.602	0.825	0.811	0.238	0.634	0.591
DRB1*14:02	118	0.724	0.860	0.889	0.445	0.694	0.735
DRB1*14:04	30	0.683	0.737	0.621	0.489	0.613	0.418
DRB1*14:12	116	0.805	0.894	0.904	0.517	0.757	0.742
DRB1*15:01	1769	0.739	0.819	0.834	0.465	0.653	0.669
DRB3*01:01	1501	0.671	0.850	0.832	0.289	0.690	0.636
DRB3*03:01	160	0.771	0.853	0.864	0.403	0.736	0.702
DRB4*01:01	1521	0.685	0.837	0.861	0.351	0.675	0.712
DRB5*01:01	3106	0.764	0.882	0.875	0.445	0.765	0.736
average	33931	0.738	0.846	0.843	0.437	0.688	0.669