Table 3.
Main characteristics of the new ISs identified using de novo methods
| Host | IS name | Family | Copy number C P | ISFinder similarity | DR | IR |
|---|---|---|---|---|---|---|
|
M. hungateii |
|
ISCNY (?) |
9 3 |
10e-12 ISPlu15 |
0 |
0 |
|
A. pernix |
|
? |
8 2 |
- |
0 |
0 |
|
S. tokodaii |
|
IS200/605 |
4 0 |
10e-20 ISBce3 |
0 |
0 |
|
F. acidarmanus |
|
? |
4 0 |
- |
6 |
27 |
|
F. acidarmanus |
|
IS200/605 |
4 0 |
6e-36 ISDge19 |
0 |
0 |
|
F. acidarmanus |
|
? |
6 1 |
- |
9 |
17 |
|
F. acidarmanus |
|
IS3 |
4 1 |
5e-29 ISBce13 |
0 |
16 |
|
F. acidarmanus |
|
IS4 (?) |
3 0 |
5e-9 ISMbov2 |
0 |
34 |
|
T. volcanium |
|
IS200/605 |
5 0 |
5e-18 ISTsib1 |
0 |
0 |
|
M. acetivorans |
|
? |
13 6 |
- |
0 |
24 |
|
M. acetivorans |
|
? |
2 1 |
- |
0 |
16 |
|
M. acetivorans |
|
? |
2 0 |
- |
0 |
21 |
|
M. acetivorans |
|
? |
5 0 |
- |
0 |
19 |
|
N. pharaonis |
|
IS200/605 |
3 0 |
8e-35 ISClte2 |
0 |
10 |
| T. kodakarensis | ? | 2 1 | - | 0 | 14 |
The host genomes and the names according the ISFinder nomenclature is indicated, the IS family when it was defined, the copy number (C: complete, P: Partial), the similarity with ISFinder (04/2011 update) and the size of the IRs and DRs.