Table 2.
Functional distribution of the sequences in the SUNREP database
| Sequence type | Number | |
|---|---|---|
| DNA transposons |
Unclassified |
373 |
| |
Tc1 Mariner |
5 |
| |
hAT |
67 |
| |
Mutator |
101 |
| |
PIF-Harbinger |
18 |
| |
CACTA |
64 |
| |
Helitron |
324 |
| |
MITE |
382 |
| Retrotransposons |
Unclassified |
192 |
| |
LTR-Copia |
8,605 |
| |
LTR-Gypsy |
19,726 |
| |
LTR-Unknown |
5,636 |
| |
Non-LTR |
261 |
| |
Pararetrovirus |
11 |
| Tandem repeats and SSR |
|
385 |
| rDNA |
|
84 |
| Putative genes |
|
483 |
| Unknown repeats |
Unclassified |
4,739 |
| |
Contig 61 type [18] |
957 |
| No hits found |
|
5,511 |
| Total | 47,924 |