Table 5.
Percentage distribution of different functional classes of non-coding DNA sequences in the sunflower genome, based on the mapping of the WGSAS
|
Sequence type |
Whole genome sequence set |
||
|---|---|---|---|
| Number of matched reads | Percentage | ||
| DNA transposons |
Unclassified |
521,152 |
0.68 |
| |
Subclass I |
445,239 |
0.58 |
| |
Subclass II |
348,166 |
0.46 |
| |
MITE |
641,043 |
0.84 |
| |
Total |
1,955,600 |
2.56 |
| Retrotransposons |
Unclassified |
347,042 |
0.45 |
| |
LTR-Copia |
14,693,697 |
19.22 |
| |
LTR-Gypsy |
37,625,059 |
49.22 |
| |
LTR-Unknown |
7,569,830 |
9.90 |
| |
Non-LTR |
541,494 |
0.71 |
| |
Pararetrovirus |
20,624 |
0.03 |
| |
Total |
60,797,746 |
79.53 |
| Tandem repeats |
|
457,613 |
0.60 |
| rDNA |
|
266,528 |
0.35 |
| Unknown repeats |
Unclassified |
3,888,190 |
5.09 |
| |
Contig 61 type [18] |
2,148,599 |
2.81 |
| |
Total |
6,036,789 |
7.90 |
| Total matched reads excluding organellar ones | 76,447,216 | ||