Table 6.
Average coverage of a sample of full-length sunflower LTR-retrotransposons measured separately on LTR and inter-LTR regions
|
Superfamily |
Sequence code [22] |
Average coverage |
LTR to Inter-LTR ratio |
|
|---|---|---|---|---|
| LTR | Inter-LTR | |||
|
Copia |
DESRLC1 |
1037.85 |
830.65 |
1.25 |
| |
DHNRLC1 |
186.63 |
3303.45 |
0.06 |
| |
LTPRLC1 |
62.72 |
13.47 |
4.66 |
| |
LTPRLC2 |
12.54 |
1367.95 |
0.01 |
| |
LTPRLC3 |
340.37 |
415.11 |
0.82 |
| |
mean |
|
|
1.36 |
|
Gypsy |
DESRLG1f |
9239.29 |
2288.53 |
4.04 |
| |
DESRLG2 |
2337.58 |
659.22 |
3.55 |
| |
DESRLG3 |
14003.10 |
3932.65 |
3.56 |
| |
DHNRLG1 |
2345.90 |
560.36 |
4.19 |
| |
DHNRLG2 |
976.16 |
1776.89 |
0.55 |
| |
LTPRLG1 |
6267.76 |
10258.53 |
0.61 |
| |
LTPRLG2 |
823.73 |
125.25 |
6.58 |
| |
LTPRLG3 |
6016.77 |
1024.56 |
5.87 |
| |
mean |
|
|
3.62 |
| Unknown |
DESRLX1 |
234.20 |
104.46 |
2.24 |
| |
DESRLX2 |
2064.22 |
1827.43 |
1.13 |
| |
DHNRLX1 |
702.73 |
5577.56 |
0.13 |
| |
DHNRLX2 |
519.09 |
791.34 |
0.66 |
| |
LTPRLX1 |
1053.57 |
1875.62 |
0.56 |
| |
LTPRLX2 |
956.69 |
356.17 |
2.69 |
| |
mean |
|
|
1.23 |
| Mean | 2.27 | |||