Table 7.
overview of RNA-transcript read coverage distribution per chromosome following mapping to the combined A- and B-genomes
| Sequence Name | Reference length/bp | Normalised mapped transcripts count | |||||||
|---|---|---|---|---|---|---|---|---|---|
| |
|
CDS |
Unigenes |
Ygi |
GM |
Mbk |
Btd |
Iho |
Karat |
| A_chr1 |
27,573,629 |
76.5 |
75.7 |
79.1 |
71.4 |
54.6 |
52.9 |
54.9 |
47.0 |
| A_chr2 |
22,054,697 |
63.7 |
59.4 |
57.4 |
53.5 |
40.9 |
40.5 |
39.7 |
30.0 |
| A_chr3 |
30,470,407 |
89.6 |
85.6 |
90.7 |
81.6 |
62.8 |
60.7 |
61.9 |
50.1 |
| A_chr4 |
30,051,516 |
92.5 |
90.0 |
88.6 |
81.9 |
63.1 |
61.7 |
57.8 |
45.3 |
| A_chr5 |
29,377,369 |
81.6 |
75.6 |
76.9 |
69.7 |
53.9 |
56.3 |
53.3 |
42.4 |
| A_chr6 |
34,899,179 |
100.7 |
103.2 |
102.2 |
92.0 |
73.1 |
70.4 |
71.0 |
54.8 |
| A_chr7 |
28,617,404 |
75.6 |
75.1 |
74.9 |
68.7 |
24.5 |
25.3 |
49.8 |
37.8 |
| A_chr8 |
35,439,739 |
94.1 |
90.3 |
98.8 |
86.5 |
69.4 |
68.0 |
68.7 |
51.8 |
| A_chr9 |
34,148,863 |
84.6 |
79.3 |
80.6 |
76.2 |
60.0 |
57.3 |
64.2 |
43.6 |
| A_chr10 |
33,665,772 |
86.6 |
88.2 |
83.9 |
75.9 |
68.7 |
67.9 |
60.5 |
42.7 |
| A_chr11 |
25,514,024 |
73.1 |
67.1 |
70.0 |
64.6 |
49.0 |
47.3 |
50.9 |
34.7 |
| A_chrUn_random |
141,147,818 |
79.7 |
51.6 |
58.1 |
51.3 |
37.7 |
37.8 |
50.4 |
31.7 |
| B_chr1 |
22,038,404 |
0.3 |
4.4 |
3.1 |
10.4 |
29.6 |
32.1 |
32.7 |
42.1 |
| B_chr2 |
17,349,238 |
0.1 |
3.8 |
2.3 |
7.6 |
22.4 |
24.1 |
23.2 |
29.6 |
| B_chr3 |
24,161,952 |
0.3 |
4.8 |
3.7 |
11.8 |
33.5 |
35.4 |
34.4 |
47.6 |
| B_chr4 |
24,656,528 |
0.1 |
4.9 |
3.5 |
11.1 |
28.5 |
29.2 |
35.1 |
43.4 |
| B_chr5 |
23,648,591 |
0.1 |
5.2 |
3.0 |
10.6 |
27.2 |
28.0 |
29.7 |
41.7 |
| B_chr6 |
27,831,592 |
0.2 |
5.9 |
4.4 |
13.9 |
36.4 |
36.2 |
36.1 |
47.6 |
| B_chr7 |
22,212,853 |
0.1 |
5.9 |
3.9 |
10.2 |
61.5 |
59.6 |
28.8 |
39.2 |
| B_chr8 |
27,665,716 |
0.1 |
6.6 |
2.8 |
12.2 |
25.6 |
26.3 |
24.6 |
46.3 |
| B_chr9 |
25,900,723 |
0.1 |
5.9 |
3.8 |
10.8 |
21.8 |
23.0 |
4.7 |
41.4 |
| B_chr10 |
25,230,959 |
0.1 |
4.1 |
3.8 |
11.6 |
10.0 |
10.8 |
22.2 |
43.5 |
| B_chr11 |
20,721,546 |
0.1 |
4.8 |
2.5 |
9.0 |
24.3 |
26.9 |
26.5 |
35.6 |
| B_chrUn_random |
141,147,818 |
0.2 |
2.7 |
2.1 |
7.6 |
21.6 |
22.1 |
18.9 |
30.2 |
|
% A |
54.0 |
99.8 |
94.1 |
96.1 |
87.3 |
65.8 |
64.6 |
68.3 |
51.2 |
| % B | 46.0 | 0.2 | 5.9 | 3.9 | 12.7 | 34.2 | 35.4 | 31.7 | 48.8 |
Read counts normalised per million total reads to allow direct comparison between cultivars. CDSm ‘Pahang’, AA variety CDS reference set; Unigenes’, EST set derived from AAA cultivar ‘Grande Naine’; Ygi, AAA cultivar ‘Yangambi-km5’; GM, AAA cultivar ‘Gros Michel’; Mbk-3, AAB cultivar ‘Mbouroukou-3’; Btd, AAB cultivar ‘Batard’; Iho, AAB cultivar ‘Iholena lele’; Karat, diploid Fe’i cultivar ‘Karat’.