Table 3.
Other characterized or putative virulence factors of A. salmonicida
| Locus | Uniprot | Name | Description |
Fold change in SNs wt/mut [PMSS]1 and [LFQ]2 |
[Unique peptides]3 and [MS/MS Count]4 |
PEP GP | PEP SP | Modlab (>0.4) | Effective (>0.95) | SignalP | TatP | Eukaryotic domain | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Log2 (wt/mut) GP | Log2 (wt/mut) SP | wt GP | mut GP | wt SP | mut SP | |||||||||||
|
Other characterized virulence factors | ||||||||||||||||
| ASA_1438 |
A4SKW5 |
VapA |
Tetragonal surface virulence array protein |
-3.181 |
-1.66 |
353 |
42 |
39 |
40 |
0.00E + 00 |
0.00E + 00 |
n |
n |
y |
n |
- |
| -7.092 |
-4.02 |
2844 |
2096 |
1203 |
3044 |
|||||||||||
| ASA_3906 |
A4SSI7 |
AerA |
Aerolysin A |
-2.43 |
-0.69 |
18 |
28 |
27 |
28 |
7.56E-292 |
0.00E + 00 |
n |
n |
y |
n |
PF03318 |
| -6.58 |
-0.85 |
79 |
351 |
358 |
560 |
|||||||||||
| ASA_2854 |
A4SPP5 |
AerB |
Aerolysin B |
-2.28 |
-0.20 |
24 |
25 |
33 |
33 |
7.45E-255 |
0.00E + 00 |
n |
n |
y |
n |
PF00652 |
| -3.20 |
0.28 |
25 |
161 |
259 |
284 |
|||||||||||
| ASA_0509 |
A4SIF4 |
SatA |
Glycero-phospholipid-cholesterol acyltransferase |
-1.54 |
-0.89 |
16 |
15 |
24 |
24 |
2.62E-221 |
0.00E + 00 |
n |
n |
y |
n |
|
| -5.08 |
-2.95 |
42 |
110 |
393 |
669 |
PF00657 |
||||||||||
| PF13472 | ||||||||||||||||
| ASA_4288 |
A4STJ0 |
PlaA1 |
Phospholipase A1 |
-0.14 |
0.21 |
22 |
23 |
24 |
23 |
0.00E + 00 |
0.00E + 00 |
n |
n |
n |
n |
- |
| -2.66 |
-1.87 |
31 |
39 |
121 |
119 |
|||||||||||
| ASA_0635 |
A4SIS6 |
PlaC |
Phospholipase C |
-4.90 |
-6.49 |
2 |
5 |
8 |
10 |
2.22E-14 |
4.03E-81 |
n |
n |
y |
n |
PF03372 |
| -6.86 |
-2.01 |
0 |
5 |
4 |
20 |
|||||||||||
| ASA_3321 |
A4SQY1 |
TagA |
Metalloprotease/mucinase ToxR-regulated lipoprotein |
-2.28 |
-0.92 |
30 |
31 |
38 |
38 |
5.47E-206 |
0.00E + 00 |
n |
n |
y |
n |
- |
| -6.12 |
-2.38 |
30 |
137 |
230 |
406 |
|||||||||||
| ASA_2540 |
A4SNU7 |
Ahe2 |
Serine protease |
-1.91 |
-0.86 |
31 |
34 |
49 |
49 |
0.00E + 00 |
0.00E + 00 |
n |
n |
y |
n |
PF01483 |
| -5.65 |
-2.51 |
529 |
1363 |
4391 |
6633 |
|||||||||||
| ASA_0604 |
A4SIP8 |
ChiY |
Chitin-binding protein |
-3.24 |
-1.03 |
15 |
19 |
22 |
24 |
2.64E-275 |
0.00E + 00 |
n |
n |
n |
n |
PF03067 |
| -6.29 |
-1.94 |
17 |
124 |
309 |
548 |
|||||||||||
| ASA_1199 |
A4SK85 |
Nuc |
Extracellular desoxyribonuclease |
NV |
-2.61 |
0 |
0 |
9 |
9 |
NV |
4.65E-86 |
n |
n |
y |
n |
PF04231 |
| -3.19 |
0 |
0 |
6 |
20 |
||||||||||||
| ASA_3475 |
A4SRC1 |
Eno |
Enolase |
0.85 |
-0.98 |
15 |
17 |
17 |
20 |
6.58E-271 |
0.00E + 00 |
n |
n |
n |
n |
PF00113 |
| PF03952 | ||||||||||||||||
| 0.44 |
-1.70 |
50 |
35 |
34 |
80 |
|||||||||||
| PF07476 | ||||||||||||||||
| ASA_3132 |
A4SQF4 |
PepO |
Peptidase M13 |
NV |
NV |
NV |
NV |
NV |
NV |
NV |
NV |
n |
n |
y |
n |
PF05649 |
| PF01431 | ||||||||||||||||
|
Putative virulence factors | ||||||||||||||||
| ASA_0826 |
A4SJA3 |
Asx |
RTX large exoprotein |
-0.50 |
-0.22 |
92 |
90 |
106 |
107 |
0.00E + 00 |
0.00E + 00 |
n |
n |
n |
n |
PF00092 |
| -1.11 |
-1.15 |
1372 |
1991 |
3830 |
4248 |
|||||||||||
| ASA_3723 |
A4SS12 |
- |
Microbial collagenase |
-0.83 |
-0.67 |
66 |
64 |
80 |
80 |
0.00E + 00 |
0.00E + 00 |
n |
n |
y |
n |
- |
| -0.96 |
-0.90 |
529 |
974 |
3304 |
4967 |
|||||||||||
| ASA_2541 |
A4SNU8 |
- |
Unknown |
-2.20 |
-1.01 |
11 |
11 |
13 |
14 |
1.91E-144 |
0.00E + 00 |
n |
n |
y |
n |
- |
| -5.88 |
-3.83 |
121 |
582 |
1571 |
2701 |
|||||||||||
| ASA_2206 |
A4SMZ6 |
NucH |
Nuclease |
-2.09 |
-0.69 |
39 |
43 |
41 |
41 |
0.00E + 00 |
0.00E + 00 |
n |
n |
y |
n |
PF03160 |
| -5.38 |
-1.48 |
75 |
289 |
215 |
345 |
PF03372 |
||||||||||
| ASA_3073 |
A4SQ99 |
- |
Leucine aminopeptidase |
-2.31 |
-0.78 |
13 |
14 |
17 |
17 |
1.39E-191 |
0.00E + 00 |
n |
n |
y |
n |
PF04389 |
| -5.13 |
-2.04 |
40 |
157 |
1074 |
1519 |
PF01546 |
||||||||||
| pRA1_0073 |
C6GA30 |
- |
Group 3 Ig-like domain protein |
-0.80 |
-0.34 |
43 |
42 |
85 |
85 |
0.00E + 00 |
0.00E + 00 |
n |
n |
y |
n |
- |
| -1.30 |
-1.33 |
67 |
108 |
859 |
992 |
|||||||||||
| ASA_P4G163 |
A4SU89 |
- |
Group 3 Ig-like domain |
-0.59 |
-0.36 |
10 |
10 |
16 |
16 |
1.01E-102 |
0.00E + 00 |
n |
n |
y |
n |
- |
| -1.65 |
-1.21 |
19 |
36 |
171 |
207 |
|||||||||||
| ASA_0873 |
A4SJD6 |
CdxA |
Chitinase |
-1.50 |
-0.76 |
27 |
29 |
50 |
51 |
0.00E + 00 |
0.00E + 00 |
n |
n |
y |
y |
PF00704 |
| -2.75 |
-1.31 |
48 |
165 |
305 |
553 |
PF02839 |
||||||||||
| ASA_2142 |
A4SMT5 |
Chi2 |
Chitinase |
-4.10 |
-2.39 |
11 |
17 |
22 |
25 |
5.49E-126 |
0.00E + 00 |
n |
n |
y |
n |
PF00182 |
| -7.15 |
-2.91 |
5 |
86 |
56 |
235 |
PF02839 |
||||||||||
| ASA_3320 |
A4SQY0 |
ChiB |
Chitinase |
-2.59 |
-1.07 |
13 |
13 |
27 |
27 |
4.47E-159 |
0.00E + 00 |
n |
n |
y |
n |
PF00182 |
| -4.79 |
-2.82 |
19 |
94 |
180 |
370 |
PF02839 |
||||||||||
| ASA_3982 |
A4SSR0 |
Taxi |
TRAP-associated extracytoplasmic immunogenic |
0.51 |
-1.50 |
11 |
9 |
16 |
18 |
4.95E-131 |
0.00E + 00 |
n |
n |
y |
n |
PF09084 |
| 0.22 |
0.20 |
18 |
18 |
63 |
127 |
|||||||||||
| ASA_0849 |
G7CXH6 |
PrtV |
immune inhibitor A metalloprotease |
-0.16 |
1.19 |
16 |
17 |
29 |
29 |
1.92E-129 |
0.00E + 00 |
y |
n |
n |
n |
- |
| -2.54 |
0.67 |
17 |
28 |
169 |
82 |
|||||||||||
| ASA_1287 |
A4SKH1 |
LasA |
Metalloprotease |
-2.82 |
-1.45 |
10 |
13 |
13 |
13 |
2.90E-123 |
0.00E + 00 |
n |
y |
n |
n |
PF01551 |
| -6.19 |
-4.03 |
16 |
81 |
146 |
349 |
|||||||||||
| ASA_1027 |
A4SJT2 |
- |
LysM domain-containing protein |
-0.57 |
1.00 |
10 |
10 |
12 |
12 |
1.92E-87 |
4.24E-187 |
n |
n |
y |
n |
PF01476 |
| -1.71 |
0.46 |
20 |
32 |
135 |
87 |
|||||||||||
| ASA_1998 |
A4SME7 |
- |
GlyGly-CTERM protein |
-1.80 |
-1.20 |
21 |
24 |
29 |
29 |
3.33E-303 |
0.00E + 00 |
n |
n |
y |
n |
- |
| -2.17 |
-1.01 |
26 |
91 |
115 |
226 |
|||||||||||
| ASA_1199 |
A4SK85 |
- |
Extracellular desoxyribonuclease |
NV |
-2.61 |
NV |
NV |
9 |
9 |
NV |
4.65E-86 |
n |
n |
y |
n |
PF04231 |
| -3.19 |
6 |
20 |
||||||||||||||
| ASA_P4G031 | A4STW2 | - | Micrococcal nuclease (SNase-like) | -0.45 |
-5.77 |
3 |
3 |
6 |
7 |
1.24E-04 | 9.28E-20 | n | y | n | n | PF00565 |
| -0.51 | -3.82 | 3 | 4 | 3 | 29 | |||||||||||
The table shows fold changes for GP and SP in SNs (Log base 2 [wt/mut]) for PMSS and LFQ values, unique peptides, MS/MS Counts, PEP values, prediction for T3-effectors (Modlab and Effective) and secretion by alternative systems (SignalP and TatP), and the presence of eukaryotic domains in the protein.
NV: No value, not detected.