. 2004 Mar;16(3):596–615. doi: 10.1105/tpc.019000

Table 2.

ABA-Induced Genes in Guard Cells

				Experiment 1			Experiment 2			Experiment 3
Affy Probe^a	Description	AGI Number^b	Cluster^c	Ratio^d	P-Value^e	Fold Change^f	Ratio	P-Value	Fold Change	Ratio	P-Value	Fold Change	Seki et al.^g	Hoth et al.^h
12046_at	Unknown protein	At1g30690	II	1.6	0.05391	3.0	1.4	0.00031	2.6	2.1	0.00000	4.3
12426_at	GTP binding protein	At2g21880	II	2.1	0.00001	4.3	2.8	0.00000	7.0	1.1	0.00036	2.1
12515_at	Expansin	At2g39700	II	1.2	0.00679	2.3	1.5	0.00018	2.8	5.4	0.00000	42.2
12521_at	Ca²⁺/H⁺-exchanging protein	At3g51860	II	2	0.00004	4.0	2.3	0.00108	4.9	1.3	0.00000	2.5
12645_at	Fibrillin precursor	At4g22240	I	1.1	0.00090	2.1	1.7	0.00011	3.2	1.2	0.00000	2.3
12749_at	Cold acclimation protein	At2g15970	I	2	0.00000	4.0	1.9	0.00000	3.7	1.4	0.00008	2.6	2.6	17.7
12753_at	Nonspecific lipid-transfer prot.	At2g38540	I	3	0.00000	8.0	2.1	0.00000	4.3	1.1	0.00000	2.1
12754_g_at	Nonspecific lipid-transfer prot.	At2g38540	II	2.4	0.00001	5.3	4	0.00015	16.0	3.7	0.00000	13.0
12781_at	Unknown protein	At1g13930	II	1.4	0.00000	2.6	1.7	0.00000	3.2	1.5	0.00001	2.8
12964_at	Protease	At5g47040	II	3.2	0.00001	9.2	3.8	0.00130	13.9	1.7	0.00000	3.2
13004_at	Senescence-associated protein	At2g17840	II	2.6	0.00053	6.1	3.5	0.00024	11.3	3	0.00000	8.0	2.63	4.1
13015_s_at	Zinc finger protein	At5g59820	II	2.6	0.00157	6.1	1.5	0.00177	2.8	1.6	0.00000	3.0	4	3.4
13067_s_at	Calcium binding protein	At1g09210	II	1.3	0.00019	2.5	1.6	0.00007	3.0	1.1	0.00002	2.1
13084_at	Unknown protein	At1g76990	II	4.1	0.00199	17.1	1.8	0.08910	3.5	1.8	0.00012	3.5
13128_at	PP2C	At4g31860	II	1.8	0.00000	3.5	1.8	0.00000	3.5	2.7	0.00000	6.5
13158_at	Cinnamoyl-CoA reductase	At2g33590	I	2.3	0.00000	4.9	1.6	0.00000	3.0	2.1	0.00001	4.3	2.65
13275_f_at	Heat shock protein	At3g46230	II	1.6	0.00061	3.0	1	0.00044	2.0	2.1	0.00065	4.3	10.71
13279_at	Heat shock protein	At5g12020	II	4.8	0.00000	27.9	3.9	0.00001	14.9	1.2	0.00000	2.3
13370_at	MAP kinase	At1g05100	II	3.6	0.00130	12.1	2.9	0.06494	7.5	3.1	0.00000	8.6		191
13426_at	Unknown protein	At2g41190	I	3.4	0.00009	10.6	1.9	0.00044	3.7	2.4	0.00000	5.3		28.6
13595_at	Unknown protein	At4g39730	II	1.3	0.00211	2.5	1.9	0.00022	3.7	1.8	0.00007	3.5
13616_s_at	60S ribosomal protein	At2g39460	II	3.9	0.00000	14.9	3	0.00000	8.0	2.1	0.00000	4.3
13617_at	Mitoch. dicarboxylate carrier	At2g22500	II	2.9	0.00177	7.5	2.0	0.34040	4.0	3.4	0.00199	10.6	1.74
13916_at	Unknown protein	At2g19800	II	2.3	0.00000	4.9	3.3	0.00000	9.8	1.5	0.00000	2.8
13918_at	Unknown protein	At1g54710	II	2.6	0.00715	6.1	3.2	0.00130	9.2	3.1	0.00000	8.6		5.4
13965_s_at	ABREs	At4g34000	II	3.7	0.00003	13.0	3.6	0.00008	12.1	5	0.00000	32.0		13.5
13966_at	Protein pEARLI 4	At4g35110	II	2.9	0.00014	7.5	1.5	0.00375	2.8	1.6	0.00001	3.0
13977_at	G-3-P dehydrogenase	At2g41540	II	4.1	0.00002	17.1	1.7	0.00041	3.2	3.3	0.00000	9.8
14052_at	Tat binding protein	At1g10070	II	2.3	0.00130	4.9	3.3	0.00003	9.8	3.7	0.00001	13.0	9.21
14526_at	Unknown protein	At4g36210	II	2.4	0.00004	5.3	1.2	0.00074	2.3	1.6	0.00001	3.0
14542_i_at	Putative prolylcarboxypeptidase	At2g24280	II	3.6	0.00020	12.1	1.2	0.00886	2.3	1.2	0.00002	2.3
14666_s_at	Trehalose-6-phosphate synthase	At1g78580	II	2	0.00047	4.0	1.8	0.00000	3.5	2.5	0.00000	5.7
14701_s_at	14-3-3 protein	At5g38480	II	1.9	0.00002	3.7	1.4	0.00001	2.6	1.7	0.00000	3.2
14722_s_at	14-3-3 protein	At5g10450	II	1.2	0.00000	2.3	1	0.00000	2.0	1.4	0.00000	2.6
14734_s_at	14-3-3 protein	At5g38480	II	1.7	0.00002	3.2	1.2	0.00001	2.3	1.8	0.00000	3.5
14846_at	Calmodulin binding protein	At1g67310	II	3.8	0.00878	13.9	2.3	0.00252	4.9	3.0	0.00130	8.0
15052_at	RD20 protein	At2g33380	I	3.8	0.00166	13.9	3.4	0.00000	10.6	1.7	0.00000	3.2	24.09	18
15053_at	DNA binding protein	At2g41870	II	2.3	0.00493	4.9	3.2	0.00267	9.2	3.5	0.00000	11.3
15110_s_at	Dehydrin	At1g76180	I	2.1	0.00029	4.3	1.9	0.00000	3.7	1.7	0.00000	3.2
15124_s_at	Pro oxidase	At3g30775	II	3.4	0.00000	10.6	4.9	0.00007	29.9	6.1	0.00000	68.6	6.78
15153_at	Chlorophyll a/b binding proteinⁱ	At3g27690	II	1.7	0.00050	3.2	2	0.00022	4.0	1.2	0.00000	2.3	1.69
15214_s_at	G-box binding transcription factor	At2g46270	II	3.7	0.00147	13.0	3.9	0.00004	14.9	3.9	0.00000	14.9	3.15
15481_at	Unknown protein	At2g30610	II	2.7	0.00069	6.5	2	0.00005	4.0	2.2	0.00000	4.6
15519_s_at	3-Methylcrotonyl-CoA carboxylase	At1g03090	II	3.3	0.00002	9.8	2.9	0.00000	7.5	2.3	0.00000	4.9	3.58
15544_at	Cation transport protein	At4g31290	II	1.6	0.01183	3.0	1.8	0.00130	3.5	3.7	0.00057	13.0		3
15582_s_at	Alternative oxidase 1a precursor	At3g22370	II	2.2	0.00000	4.6	1.7	0.00000	3.2	2.1	0.00000	4.3	3.79
15611_s_at	Low-temperature-induced protein	At5g52310	II	2.6	0.00000	6.1	3.2	0.00002	9.2	3.7	0.00000	13.0	9.09	58.3
15625_at	Glyoxalase II	At1g53580	I	2.4	0.00000	5.3	1.7	0.00000	3.2	1.6	0.00000	3.0	5.63
15672_s_at	Arabinogalactan protein (AGP2)	At2g22470	II	2.3	0.00006	4.9	3.8	0.00000	13.9	1.9	0.00000	3.7	7.52
15863_at	Unknown protein	At2g21820	II	2.6	0.00000	6.1	3	0.00000	8.0	2.6	0.00000	6.1
15997_s_at	Unknown protein	At1g20440	I	2.4	0.00000	5.3	2.2	0.00000	4.6	2.7	0.00000	6.5	6.28	17
16031_at	Ferritin1 precursor	At5g01600	I	1.1	0.00147	2.1	2.1	0.00000	4.3	1.6	0.00000	3.0	2.77
16037_s_at	Unknown protein	At1g20696	II	2.1	0.00001	4.3	1.4	0.00115	2.6	3	0.00000	8.0
16038_s_at	Dehydrin	At5g66400	I	3.5	0.00000	11.3	3.4	0.00000	10.6	3.8	0.00000	13.9	6.83	77.6
16062_s_at	DRE CRT binding protein	At4g25470	II	2.1	0.00025	4.3	1.5	0.00096	2.8	1.8	0.00000	3.5
16099_at	MYB family transcription factor	At4g09460	II	1.5	0.30683	2.8	2.1	0.00238	4.3	1.5	0.00000	2.8
16115_at	Homeobox protein ATHB-12	At3g61890	I	2	0.00084	4.0	3.1	0.00002	8.6	1.1	0.00002	2.1	9.11	58
16440_at	Unknown protein	At2g40000	II	2.0	0.00549	4.0	2.7	0.00018	6.5	1.0	0.00188	2.0	3.17
16510_at	Unknown protein	At4g32480	II	2.9	0.00079	7.5	3.6	0.00029	12.1	1.8	0.00001	3.5
16524_at	Aldehyde dehydrogenase	At1g54100	I	1.9	0.00002	3.7	1.3	0.00001	2.5	1.5	0.00000	2.8	6.61
16544_s_at	60S ribosomal protein	At2g39460	II	3.4	0.00000	10.6	2.9	0.00000	7.5	2.1	0.00000	4.3
16953_at	Ribosomal protein	At1g67430	II	2.4	0.00007	5.3	2.5	0.06734	5.7	1.9	0.00000	3.7
17384_at	Unknown protein	At4g23630	II	1.0	0.00001	2.0	1.3	0.00000	2.5	1.9	0.00000	3.7
17407_s_at	Low-temperature-induced protein	At5g52300	II	3.4	0.00098	10.6	2.7	0.00211	6.5	5.3	0.00000	39.4	12.82
17441_s_at	Unknown protein	At1g78860	II	3.4	0.00007	10.6	2.6	0.00157	6.1	3.7	0.00000	13.0
17442_i_at	Glycoprotein	At1g78850	II	3	0.00081	8.0	2.8	0.00022	7.0	1.7	0.00022	3.2	1.99
17769_s_at	Trehalose-6-phosphate synthase	At1g78580	II	1.6	0.00000	3.0	1.4	0.00011	2.6	3	0.00000	8.0
17824_s_at	MYB-related protein	At4g21440	II	5	0.00000	32.0	4.5	0.00000	22.6	2	0.00000	4.0		33
17921_s_at	Shaggy-like protein kinase	At4g18710	II	2.1	0.00252	4.3	1.6	0.13906	3.0	1.3	0.00000	2.5
17978_s_at	MYB96 transcription factor	At5g62470	II	1.8	0.00024	3.5	1.8	0.00096	3.5	1.2	0.00000	2.3
18594_at	Unknown protein	At1g01470	I	1.1	0.00000	2.1	1	0.00000	2.0	1.5	0.00000	2.8	4.01	4.6
18624_at	Unknown protein	At2g39570	II	4.2	0.00013	18.4	2.7	0.00267	6.5	2.9	0.00000	7.5
18646_at	Unknown protein	At1g10590	II	1.3	0.00010	2.5	1.1	0.00004	2.1	1.3	0.00000	2.5
18663_s_at	Unknown protein	At4g24130	II	2.2	0.00000	4.6	2.1	0.00000	4.3	1.5	0.00000	2.8		6.8
18872_at	LEA-like protein	At3g17520	II	5.4	0.00001	42.2	6.2	0.00000	73.5	5.2	0.00000	36.8
18936_at	PP2C AtP2C-HA	At1g72770	I	4	0.00000	16.0	5.8	0.00001	55.7	2.2	0.00000	4.6		3.5
18949_at	MYB-related protein	At5g67300	II	5.1	0.00000	34.3	1.6	0.00065	3.0	2.2	0.00000	4.6
18955_at	β-Ketoacyl-CoA synthase	At1g04220	II	1.6	0.01183	3.0	2.5	0.00299	5.7	2.1	0.00000	4.3		3.2
19152_at	LEA	At5g06760	I	3.5	0.00000	11.3	6.6	0.00000	97.0	3.4	0.00000	10.6	13.29	328
19186_s_at	Dehydrin Xero2	At3g50970	I	2.9	0.00000	7.5	3.1	0.00000	8.6	4.5	0.00000	22.6
19441_s_at	G-box binding factor	At4g01120	II	4.3	0.00139	19.7	1.7	0.00012	3.2	3	0.00004	8.0
19638_at	PP2C	At3g11410	I	3.6	0.00000	12.1	2.1	0.00000	4.3	2.9	0.00000	7.5	7.58	4.6
19646_at	Homeodomain transcription factor	At2g46680	I	3.9	0.00000	14.9	3.4	0.00000	10.6	2.3	0.00000	4.9	8.84	27.7
19688_at	Low-temperature-induced protein	At4g25580	II	1.0	0.01897	2.0	3.5	0.00166	11.3	2.6	0.00000	6.1
19852_s_at	Cytoplasmatic aconitate hydratase	At4g35830	II	1.1	0.00003	2.1	1.1	0.00001	2.1	1.8	0.00000	3.5
19860_at	Transcription factor	At1g56170	II	1.6	0.00038	3.0	1.4	0.00130	2.6	1.8	0.00000	3.5		4
19982_at	Unknown protein	At1g79270	I	3.5	0.00753	11.3	1.3	0.00044	2.5	3.8	0.00000	13.9
20042_at	No hits		II	2.7	0.00000	6.5	2.4	0.00000	5.3	1.3	0.00000	2.5
20060_at	No hits		II	5	0.00001	32.0	2.8	0.00006	7.0	2.3	0.00000	4.9
20186_at	Unknown protein	At1g08630	II	2.3	0.00299	4.9	1.1	0.00009	2.1	2.1	0.00001	4.3
20200_at	Unknown protein	At4g25690	II	1.4	0.02480	2.6	1.2	0.00029	2.3	1.3	0.00000	2.5	1.89
20323_at	Small heat shock protein	At2g29500	II	3.4	0.00018	10.6	1.2	0.00027	2.3	2.1	0.00001	4.3
20635_s_at	MYB96 transcription factor	At5g62470	II	1.0	0.02705	2.0	2.2	0.00019	4.6	1.1	0.00000	2.1
20641_at	LEA	At1g52690	I	4.9	0.00001	29.9	6.6	0.00000	97.0	3.6	0.00000	12.1	30.75	1799

Describes names of probe set on Affymetrix chip.

AGI locus numbers.

Indicates clusters in Figure 5.

Signal log value, which measures the change in expression level for a transcript between two arrays. This change is expressed as the log₂ ratio. A log₂ ratio of 1 is the same as a fold change of 2.

Change P-value, which measures the probability that the expression levels of a probe in two different arrays are the same. Change P-values of 0.00000 correspond to P-value <0.000005.

Fold change is calculated using the signal log ratio (see Methods).

Obtained from Supplemental Table 1 online (column for 5-h ABA treatment; Seki et al., 2002).

Obtained from Supplemental Table Induced.xls online (Hoth et al., 2002).

ⁱ

Chlorophyll a/b binding protein gene expression is repressed by ABA at 1, 2, 10, and 24 h of ABA treatment but shows ABA induction at 5 h of ABA treatment (see Seki et al., 2002, Supplemental Table 5 online).