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. 2013 Dec 5;93(6):1087–1099. doi: 10.1016/j.ajhg.2013.11.004

Table 2.

List of eQTL-Centric Association Results: Significant Hits

Trait SNP Chr Position A1 A2 χ2 p Value Probe ID Transcript Gene Transcript Chr eQTL
Glu rs1335051 1 107,460,385 G T 9.78 1.8 × 10−3 ILMN_2399463 VAV3 1 cis
Glu rs2303565 2 219,253,553 T C 9.33 2.3 × 10−3 ILMN_1704985 CYP27A1 2 cis
Glu rs1344642 2 219,263,506 G A 9.33 2.3 × 10−3 ILMN_1704985 CYP27A1 2 cis
Cholesterol rs11373 16 55,102,676 A G 17.30 3.2 × 10−5 ILMN_1723116 AMFR 16 cis
Cholesterol rs12447395 16 55,086,841 T C 9.42 2.1 × 10−3 ILMN_1723116 AMFR 16 cis
Cholesterol rs2288055 16 55,059,307 C T 9.25 2.4 × 10−3 ILMN_1723116 AMFR 16 cis
Cholesterol rs2288056 16 55,076,598 A G 9.25 2.4 × 10−3 ILMN_1723116 AMFR 16 cis
Cholesterol rs3790113 16 54,942,221 T C 8.82 3.0 × 10−3 ILMN_1723116 AMFR 16 cis
HDL rs3851117 11 56,993,689 C T 10.13 1.5 × 10−3 ILMN_1765332 TIMM10 11 cis
HDL rs2848630 11 57,113,483 G A 8.82 3.0 × 10−3 ILMN_1765332 TIMM10 11 cis
LDL rs11373 16 55,102,676 A G 14.89 1.1 × 10−4 ILMN_1723116 AMFR 16 cis
Trig rs927340 6 2,968,717 G A 10.42 1.2 × 10−3 ILMN_1674285 LOC401233 6 cis
Trig rs17106351 14 19,762,145 G A 10.21 1.4 × 10−3 ILMN_1719158 CTBP1 4 trans
Trig rs9503375 6 2,991,536 T G 9.11 2.5 × 10−3 ILMN_1674285 LOC401233 6 cis
Trig rs911536 6 2,972,130 G A 8.95 2.8 × 10−3 ILMN_1674285 LOC401233 6 cis
Weight rs2243523 17 78,273,738 G T 13.41 2.6 × 10−4 ILMN_1652333 FN3KRP 17 cis
BMI rs2243523 17 78,273,738 G T 12.95 3.2 × 10−4 ILMN_1652333 FN3KRP 17 cis
WC rs10831551 11 2,194,864 A C 11.75 6.1 × 10−4 ILMN_1668605 NAAA 4 trans
WC rs2243523 17 78,273,738 G T 11.75 6.1 × 10−4 ILMN_1652333 FN3KRP 17 cis
WC rs10831570 11 2,199,188 C A 10.81 1.0 × 10−3 ILMN_1668605 NAAA 4 trans
Hip rs2243523 17 78,273,738 G T 10.62 1.5 × 10−3 ILMN_1652333 FN3KRP 17 cis
Hip rs10831551 11 2,194,864 A C 9.37 2.8 × 10−3 ILMN_1668605 NAAA 4 trans
WHR rs2726207 4 108,858,940 A C 9.55 2.0 × 10−3 ILMN_1781819 PAPSS1 4 cis
SBP rs17526904 8 29,003,762 C T 12.00 7.7 × 10−4 ILMN_1720059 HMBOX1 8 cis
SBP rs7225515 17 78,389,072 G A 9.53 2.7 × 10−3 ILMN_1652333 FN3KRP 17 cis
SBP rs1044661 17 78,494,309 G A 9.42 2.9 × 10−3 ILMN_1652333 FN3KRP 17 cis
DBP rs4793854 17 43,927,132 G A 9.31 2.3 × 10−3 ILMN_1810274 HOXB2 17 cis

Abbreviations are as follows: A1, allele 1; A2, allele 2; BMI, body mass index; chr, chromosome; DBP, diastolic blood pressure; eQTL, expression quantitative trait locus; glu, plasma glucose; HDL, high-density lipoprotein; hip, hip circumference; LDL, low-density lipoprotein; SBP, systolic blood pressure; trig, triglycerides; WC, waist circumference; and WHR, waist-to-hip ratio.