Table 5.
Enrichment of GO terms of negatively and positively correlated smRNA-mRNA expression pairs to manually assorted higher order categories
| GO process ID | Description | P |
|---|---|---|
|
Protein modification |
|
|
|
Negative correlation |
|
|
| GO:0006457 |
Protein folding |
0.000 |
| GO:0051082 |
Unfolded protein binding |
0.002 |
| GO:0004252 |
Serine-type endopeptidase activity |
0.013 |
| GO:0018106 |
Peptidyl-histidine phosphorylation |
0.009 |
| GO:0016925 |
Protein sumoylation |
0.005 |
| GO:0003755 |
Peptidyl-prolyl cis-trans isomerase activity |
0.025 |
| GO:0036065 |
Fucosylation |
0.034 |
| GO:0000413 |
Protein peptidyl-prolyl isomerization |
0.021 |
|
Positive correlation |
|
|
| GO:0019787 |
Small conjugating protein ligase activity |
0.021 |
| GO:0006487 |
Protein N-linked glycosylation |
0.045 |
| GO:0047485 |
Protein N-terminus binding |
0.013 |
| GO:0070534 |
Protein K63-linked ubiquitination |
0.011 |
| GO:0042787 |
Protein ubiquitination in ubiquitin-dependent protein catabolic process |
0.021 |
| GO:0019773 |
Proteasome core complex, alpha-subunit complex |
0.034 |
| GO:0004180 |
Carboxypeptidase activity |
0.000 |
|
Immunity |
|
|
|
Negative correlation |
|
|
| GO:0016446 |
Somatic hypermutation of immunoglobulin genes |
0.009 |
|
Positive correlation |
|
|
| GO:0002666 |
Positive regulation of T cell tolerance induction |
0.015 |
| GO:0042130 |
Negative regulation of T cell proliferation |
0.024 |
| GO:0002698 |
Negative regulation of immune effector process |
0.036 |
|
Signaling |
|
|
|
Negative correlation |
|
|
| GO:0023014 |
Signal transduction by phosphorylation |
0.046 |
| GO:0009909 |
Regulation of flower development |
0.034 |
| GO:0010019 |
Chloroplast-nucleus signaling pathway |
0.011 |
| GO:0031930 |
Mitochondria-nucleus signaling pathway |
0.011 |
|
Positive correlation |
|
|
| GO:0031930 |
Mitochondria-nucleus signaling pathway |
0.000 |
|
DNA damage |
|
|
|
Negative correlation |
|
|
| GO:0032404 |
Mismatch repair complex binding |
0.001 |
| GO:0006307 |
DNA dealkylation involved in DNA repair |
0.034 |
| GO:0032300 |
Mismatch repair complex |
0.005 |
| GO:0031072 |
Heat shock protein binding |
0.005 |
| GO:0008630 |
Intrinsic apoptotic signaling pathway in response to DNA damage |
0.038 |
|
Positive correlation |
|
|
| GO:0008630 |
Intrinsic apoptotic signaling pathway in response to DNA damage |
0.036 |
| GO:0006289 |
Nucleotide-excision repair |
0.015 |
|
Gene expression |
|
|
|
Negative correlation |
|
|
| GO:0035552 |
Oxidative single-stranded DNA demethylation |
0.028 |
| GO:0030261 |
Chromosome condensation |
0.004 |
|
Positive correlation |
|
|
| GO:0031048 |
Chromatin silencing by small RNA |
0.008 |
|
Translation |
|
|
|
Negative correlation |
|
|
| GO:0006412 |
Translation |
0.030 |
| GO:0003735 |
Structural constituent of ribosome |
0.006 |
| GO:0022627 |
Cytosolic small ribosomal subunit |
0.009 |
| GO:0042255 |
Ribosome assembly |
0.013 |
| GO:0016071 |
mRNA metabolic process |
0.050 |
| GO:0006364 |
rRNA processing |
0.000 |
|
Positive correlation |
|
|
| GO:0008353 |
RNA polymerase II carboxy-terminal domain kinase activity |
0.032 |
| GO:0005689 |
U12-type spliceosomal complex |
0.008 |
| GO:0015935 |
Small ribosomal subunit |
0.000 |
|
Metabolism |
|
|
|
Negative correlation |
|
|
| GO:0043734 |
DNA-N1-methyladenine dioxygenase activity |
0.030 |
| GO:0051747 |
Cytosine C-5 DNA demethylase activity |
0.030 |
| GO:0043462 |
Regulation of ATPase activity |
0.017 |
| GO:0019213 |
Deacetylase activity |
0.017 |
| GO:0016811 |
Hydrolase activity |
0.045 |
| GO:0019478 |
D-amino acid catabolic process |
0.001 |
| GO:0016308 |
1-phosphatidylinositol-4-phosphate 5-kinase activity |
0.050 |
| GO:0042264 |
Peptidyl-aspartic acid hydroxylation |
0.035 |
|
Positive correlation |
|
|
| GO:0006662 |
Glycerol ether metabolic process |
0.008 |
| GO:0042775 |
mitochondrial ATP synthesis coupled electron transport |
0.017 |
| GO:0001522 |
Pseudouridine synthesis |
0.006 |
| GO:0003879 |
ATP phosphoribosyltransferase activity |
0.047 |
| GO:0009982 |
Pseudouridine synthase activity |
0.005 |
| GO:0005388 |
Calcium-transporting ATPase activity |
0.024 |
| GO:0016847 |
1-aminocyclopropane-1-carboxylate synthase activity |
0.018 |
| GO:0042218 |
1-aminocyclopropane-1-carboxylate biosynthetic process |
0.017 |
| GO:0015035 |
Protein disulfide oxidoreductase activity |
0.012 |
| GO:0009062 |
Fatty acid catabolic process |
0.003 |
| GO:0015020 |
Glucuronosyltransferase activity |
0.008 |
| GO:0047661 |
Amino-acid racemase activity |
0.025 |
| GO:0009252 |
Peptidoglycan biosynthetic process |
0.008 |
| GO:0016303 |
1-phosphatidylinositol-3-kinase activity |
0.037 |
| GO:0036092 |
Phosphatidylinositol-3-phosphate biosynthetic process |
0.050 |
| GO:0042823 |
Pyridoxal phosphate biosynthetic process |
0.001 |
| GO:0019213 | Deacetylase activity | 0.015 |
Only categories that are negatively and positively correlated are shown.