Table 1.
Description of gene expression data sets used in the study
| ID | Author(s) | Acc # | Pathogen | Platform | Target cell/tissue |
|---|---|---|---|---|---|
| |
H. sapiens |
|
|
|
|
| D1 |
Babiceanu et al. [*] |
GSE32893 |
A. alternata |
HG-U133_Plus_2 |
Epithelial |
| D2 |
Mezger et al.[19] |
GSE6965 |
A. fumigatus |
HG-U133_Plus_2 |
Dendritic |
| D3 |
Sharon et al.[21] |
GSE24983 |
A. fumigatus |
HG-U133A_2 |
Epithelial |
| D4 |
Mattingsdal et al. [*] |
E-MEXP-1103 |
A. fumigatus |
HG-U133_Plus_2 |
Monocytes |
| D5 |
Rubin-Bejerano et al. [*] |
E-MEXP-914 |
C. albicans |
HG-U133A_2 |
Neutrophils |
| D6 |
Rizzetto et al.[22] |
E-MTAB-135 |
C. albicans |
Illumina HumanHT-12 v3.0 |
Dendritic |
| D7 |
Müller et al.[23] |
GSE7355 |
C. albicans |
HG-U133A |
Endothelial |
| |
R. norvegicus |
|
|
|
|
| D8 |
Cheng et al.[24] |
GSE20149 |
P. jirovecii |
RG_U34A |
Macrophages |
| |
M. musculus |
|
|
|
|
| D9 | Shimodaira et al. [*] | GSE23178 | S. chartarum | Mouse430_2 | Lung |
The columns from left to right are (i) data set id, (ii) authors and the publication associated with the data set, (iii) GEO or ArrayExpress accession number, (iv) pathogen name, (v) microarray platform, and (vi) cell/tissue type from which gene expression measurements were taken. Data sets are categorized by the host, namely, H. sapiens, R. norvegicus and M. musculus. [*] indicates the data set that does not have an associated publication.