Table 4.
Crystal structures of SLC family members. This table gives an overview of available SLC family member structures based on information obtained from this mini-review series. This list describes general structural data with the name of the crystallized homologues. The origins of the homologues and the expression hosts are also mentioned. Information about the oligomeric state of the protein in the crystal, its substrate, if co-crystalized, its resolution (Å) and protein data bank accession number are also provided.
Crystal structures of SLC family members | |||||||
---|---|---|---|---|---|---|---|
Human SLC family name | Homologue name | Homologue/expression system | Oligomeric state | Co-crystallization | Resolution | Protein Data Bank (PDB) accession# | References |
SLC1 | GltPh | Pyrococcus horikoshii/Bacteria | Trimer | l-glutamate | 3.5 Å | 1XFH | Yernool et al. (2004) |
l-aspartate, Sodium | 3.29 Å | 2NWX | Boudker et al. (2007) | ||||
DL-Threo-Beta-Benzyloxyaspartate (DL-TBOA) | 3.2 Å | 2NWW | |||||
l-aspartate | 2.96 Å | 2NML | |||||
SLC2 | XylE | Escherichia coli/Bacteria | – | d-xylose | 2.8 Å | 4GBY | Sun et al. (2012) |
d-glucose | 2.9 Å | 4GBZ | |||||
6-bromo-6-deoxy-D-glucose | 2.6 Å | 4GCO | |||||
SLC3/7 | AdiC | Salmonella enterica subsp./Bacteria | Tetramer | FAB fragment | 3.2 Å | 3NCY | Fang et al. (2009) |
Escherichia coli/Bacteria | Dimer | – | 4 Å | 3LRC | Gao et al. (2009) | ||
l-arginine | 3 Å | 3L1L | Gao et al. (2010) | ||||
– | 3 Å | 3OB6 | Kowalczyk et al. (2011) | ||||
ApcT | Methanocaldococcus jannaschii/Bacteria | – | – | 2.32 Å | 3GIA | Shaffer et al. (2009) | |
FAB fragment | 2.48 Å | 3GI9 | |||||
2.59 Å | 3GI8 | ||||||
GadC | Escherichia coli/Bacteria | Dimer | – | 3.1 Å | 4DJK | Ma et al. (2012) | |
SLC6 | LeuT | Eubacterium Aquifex aeolicus/Bacteria | – | Tricyclic antidepressant (TCA) clomipramine | 1.85 Å | 2Q6H | Singh et al. (2007) |
l-leucine, Sodium, Imipramine | 1.7 Å | 2Q72 | |||||
Mhp1 | Microbacterium liquefaciens/Bacteria | – | –– | 3.8 Å | 2X79 | Shimamura et al. (2010) | |
SLC8/24 | NCX_MJ | Methanococcus jannaschii/Bacteria | – | – | 1.9 Å | 3V5U | Liao et al. (2012) |
SLC9 | NhaA | Escherichia coli/Bacteria | – | – | 3.45 Å | 1ZCD | Hunte et al. (2005) |
SLC10 | ASBTNM | Neisseria memingitidis/Bacteria | – | Taurocholate | 2.2 Å | 3ZUX | Hu et al. (2011) |
SLC13 | VcINDY | Vibrio cholerae/Bacteria | Dimer | Citrate | 3.2 Å | 4F35 | Mancusso et al. (2012) |
SLC14 | dvUT | Desulfovibrio vulgaris/Bacteria | – | N,N’-dimethylurea | 2.4 Å | 3K3F | Levin et al. (2009) |
SLC15 | PepTSo | Shewanella oneidensis/Bacteria | – | – | 3.6 Å | 2XUT | Newstead et al. (2011) |
SLC16 | GlpT | Escherichia coli/Bacteria | – | – | 3.3 Å | 1PW4 | Huang et al. (2003) |
SLC23 | UraA | Escherichia coli/Bacteria | – | Uracil | 2.8 Å | 3QE7 | Lu et al. (2011) |
SLC25 | ANT1 | Bos taurus/− | – | Carboxyatractyloside (CATR) | 2.2 Å | 1OKC | Pebay-Peyroula et al. (2003) |
UCP2⁎ | Mus musculus/Bacteria | – | GDP | – | 2LCK | Berardi et al. (2011) | |
SLC28 | vcCNT | Vibrio cholerae/Bacteria | Trimer | Uridine | 2.4 Å | 3TIJ | Johnson et al. (2012) |
SLC30 | YiiP | Escherichia coli/Bacteria | Dimer | Zinc | 3.8 Å | 2QFI | Lu et al. (2009) |
SLC42 | AmtB | Escherichia coli/Bacteria | Trimer | – | 1.4 Å | 1U7G | Khademi et al. (2004) |
Rh | Nitrosomonas europaea/Bacteria | Trimer | Carbon dioxide | 1.85 Å | 3B9Z | Li et al. (2007) | |
SLC47 | NorM | Vibrio cholerae/Bacteria | – | – | 3.65 Å | 3MKT | He et al. (2010) |
Structure determined by NMR methods.