Table 2.
454 sequence reads in the SH*RH population
|
complete reads (#) |
bulk* specific K-mers (#) |
R gene family with highest homology | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
|
BR |
BS |
BR |
BS |
BR |
BS |
BR |
BS |
BR |
BS |
|
| >= 2 | >= 7 | >= 12 | >= 15 | |||||||
| 17990 |
29516 |
128 |
256 |
0 |
20 |
0 |
1 |
0 |
0 |
Mi-1.2/Rpi-blb2 |
| 14848 |
28044 |
68 |
298 |
0 |
21 |
0 |
0 |
0 |
0 |
Hero |
| 13487 |
23565 |
172 |
439 |
37 |
70 |
18 |
9 |
3 |
3 |
I-2/R3a/R3b |
| 1427 |
2320 |
81 |
150 |
0 |
3 |
0 |
0 |
0 |
0 |
RB/Rpi-blb1/Rpi-pta1/Rpi-sto1 |
| 1228 |
2520 |
53 |
223 |
0 |
0 |
0 |
0 |
0 |
0 |
R1 |
| 1230 |
2011 |
64 |
99 |
0 |
0 |
0 |
0 |
0 |
0 |
Rpi-blb3/R2/Rpi-abpt1 |
| 277 |
516 |
14 |
29 |
0 |
0 |
0 |
0 |
0 |
0 |
NRC1 |
| 293 |
402 |
6 |
146 |
0 |
33 |
0 |
0 |
0 |
0 |
Rpi-chc1 |
| 209 |
362 |
0 |
25 |
0 |
2 |
0 |
0 |
0 |
0 |
Sw-5a |
| 207 |
283 |
5 |
10 |
0 |
3 |
0 |
0 |
0 |
0 |
Rx/Gpa2 |
| 43 |
43 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
Prf1 |
| 22 |
31 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
Tm-2/Rpi-vnt1 |
| 1 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
N |
| 51240 |
89583 |
|
|
|
|
|
|
|
|
total (E-value < e-20)** |
| 88475 | 150513 | 591 | 1675 | 37 | 152 | 18 | 10 | 3 | 3 | total |
>=n: K-mers that occurred more than n times were counted.
* Individuals were grouped in resistant (R3a and R3b) and susceptible bulks (BR and BS).
** E-values were obtained after BLAST analysis against a database of 34 selected R genes.
# numbers of.