Table 2.
LOD scores and percentages of phenotypic variation in CxA and WxBy QTL analyses
|
CxA |
WxBy |
||||||
|---|---|---|---|---|---|---|---|
|
Position (cM) |
Locus |
LOD |
% Expl. |
Position (cM) |
Locus (c) |
LOD 2010/2011 |
% Expl. 2010/2011 |
| 2007/2008 | 2007/2008 | ||||||
| 33.443 |
UDP96003a* |
65.3/67.5 |
64.4/65.3 |
34.015 |
SNP_IGA_410336c**** |
29.59/32.48 |
78.7/77.6 |
| 34.443 |
|
71.7/74.1 |
67.8/68.6 |
34.015 |
SNP_IGA_410265c**** |
29.59/32.48 |
78.7/77.6 |
| 35.443 |
|
76.1/78.6 |
70.0/70.8 |
35.015 |
|
36.24/37.43 |
85/82.2 |
| 36.443 |
|
77.8/80.3 |
70.8/71.6 |
35.493 |
SNP_IGA_410398c**** |
37.92/38.45 |
86.3/83 |
| 36.909 |
M12aa* |
77.6/80.1 |
70.7/71.5 |
36.473 |
SNP_IGA_410478c**** |
41.47/43.07 |
88.6/86.2 |
| 37.301 |
S4_09221311c** |
80.3/83.5 |
71.9/73.0 |
36.961 |
SNP_IGA_411637c**** |
43.15/45.41 |
89.5/87.6 |
| 38.301 |
|
97.7/102.3 |
78.7/79.8 |
37.449 |
MDa**** |
47.81/52.85 |
91.8/91.2 |
| 39.301 |
|
111.5/117.3 |
82.9/84.1 |
37.937 |
SNP_IGA_412338c***** |
41.87/49.34 |
88.8/89.7 |
| 40.301 |
|
117.6/123.7 |
84.5/85.6 |
38.937 |
|
42.12/48.2 |
89/89.1 |
| 40.358 |
PTP_11b** |
117.7/123.8 |
84.5/85.6 |
39.937 |
|
37.29/41.04 |
85.8/84.9 |
| 41.358 |
|
144.0/152.9 |
89.8/90.9 |
40.425 |
SNP_IGA_413115c****** |
34.16/37.05 |
83.3/81.8 |
| 41.522 |
PTP_10b** |
144.8/153.5 |
89.9/91.0 |
40.912 |
SNP_IGA_414017c****** |
31/35.93 |
80.3/80.9 |
| 42.522 |
|
179.7/176.5 |
94.2/93.7 |
41.400 |
SNP_IGA_415301c***** |
28.58/34.91 |
77.6/80 |
| 43.023 |
PTP_4b** |
185.7/178.6 |
94.7/93.9 |
41.888 |
SNP_IGA_415799c**** |
27.32/33.99 |
76.1/79.1 |
|
43.681 |
MDa** |
231.2/224.1 |
97.4/97.0 |
|
|
|
|
| 44.681 |
|
194.1/183.1 |
95.4/94.3 |
|
|
|
|
| 45.149 |
PTP_8b** |
166.2/157.4 |
92.8/91.5 |
|
|
|
|
| 45.507 |
SNP_IGA_415301c* |
154.5/146.3 |
91.3/89.9 |
|
|
|
|
| 45.671 |
PTP_SNP40b** |
146.0/137.6 |
90.1/88.4 |
|
|
|
|
| 45.834 |
PTP_SNP82b** |
139.3/131.1 |
89.0/87.2 |
|
|
|
|
| 46.193 | EPPISF032a* | 148.6/139.5 | 90.5/88.8 | ||||
The highest LOD and percentage of phenotypic variation are indicated in bold with the nearest marker. Positions are indicated in cM (centiMorgan). (a) Markers from Eduardo et al. [10], (b) newly developed markers, (c) markers from Verde et al. [17]. Significance levels of locus-genotype frequencies: *:0.1 **:0.05 ***:0.01 ****:0.005 *****:0.001 ******:0.0005 *******:0.0001.