Table 4.
Detection of polymorphisms in CxA F1 parent from whole-genome re-sequencing data in the qMD4.1 region delimited by the WxBy recombinant individuals
| Position (bp) | Polymorphism type (bp) | Polymorphism position | Peach transcript id | Annotation |
|---|---|---|---|---|
| 10,995,012 |
SNP |
Intergenic |
|
|
| 10,995,076 |
INDEL (2) |
Intergenic |
|
|
| 11,041,083 |
INDEL (2) |
Intergenic |
|
|
| 11,076,551 |
INDEL (1) |
5' UTR |
ppa025660m |
Predicted β-glucosidase 18 |
| 11,086,901 |
SNP |
Intergenic |
|
|
| 11,097,272 |
SNP |
Intergenic |
|
|
| 11,107,278 |
INDEL (9) |
In frame insertion |
ppa008301m |
NAC domain-containing protein 72 |
| 11,115,079 |
INDEL (2) |
Intergenic |
|
|
| 11,115,085 |
INDEL (8) |
Intergenic |
|
|
| 11,115,087 |
INDEL (3) |
Intergenic |
|
|
| 11,115,946 |
INDEL (7) |
Intergenic |
|
|
| 11,115,948 |
SNP |
Intergenic |
|
|
| 11,115,953 |
INDEL (6) |
Intergenic |
|
|
| 11,115,961 |
INDEL (3) |
Intergenic |
|
|
| 11,115,968 |
INDEL (3) |
Intergenic |
|
|
| 11,116,073 |
INDEL (15) |
Intergenic |
|
|
| 11,116,145 |
INDEL (59) |
Intergenic |
|
|
| 11,116,147 |
SNP |
Intergenic |
|
|
| 11,142,067 |
INDEL (1) |
Intergenic |
|
|
| 11,142,748 |
INDEL (1) |
Intergenic |
|
|
| 11,190,195 | SNP | Intergenic |