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. 2013 Oct 15;45(1):39. doi: 10.1186/1297-9686-45-39

Table 5.

Rate of inbreeding (%) with different marker densities and levels of pre-selection for within-family selection

Pre-selected
CONV
Marker density (markers per Morgan)
    3 6 12 25 50 100
3%
 
1.34 (0.04)
1.46 (0.04)
1.50 (0.05)
1.45 (0.04)
1.52 (0.04)
1.50 (0.05)
10%
 
1.36 (0.02)
1.40 (0.03)
1.48 (0.04)
1.42 (0.03)
1.45 (0.03)
1.42 (0.03)
17%
 
1.39 (0.03)
1.46 (0.04)
1.42 (0.04)
1.36 (0.03)
1.33 (0.03)
1.37 (0.02)
20%
 
1.36 (0.02)
1.33 (0.03)
1.35 (0.03)
1.37 (0.03)
1.37 (0.03)
1.38 (0.03)
25%
 
1.33 (0.03)
1.32 (0.03)
1.32 (0.03)
1.34 (0.03)
1.31 (0.03)
1.35 (0.03)
50%
 
1.34 (0.03)
1.24 (0.03)
1.23 (0.03)
1.17 (0.02)
1.21 (0.03)
1.21 (0.02)
100% 1.31 (0.03) 1.32 (0.03) 1.22 (0.02) 1.24 (0.03) 1.17 (0.02) 1.12 (0.03) 1.18 (0.03)

Selection was on a combination of conventional BLUP family breeding values and within family genomic breeding values (W-FAM) at different marker densities. Rate of inbreeding obtained by the conventional breeding strategy (CONV) was included for comparison. Standard errors are given in parentheses.