Table 6.
Notable regions classified as growth-advantage
| Orf Ids | Included genes | Length of growth-advantage region | Average reads |
|---|---|---|---|
| Rv3295, Rv3296 |
lhr |
27 |
1098 |
| Rv2939, Rv2940c, Rv2941 |
papA5, mas, fadD28 |
149 |
870 |
| Rv2411c |
- |
25 |
773 |
| Rv0483 |
lprQ |
36 |
694 |
| Rv2930, Rv2931, Rv2932, Rv2933, Rv2934, Rv2935 |
fadD26, ppsA, ppsB, ppsC, ppsD, ppsE |
398 |
655 |
| Rv1843c, Rv1844c |
guaB1, gnd1 |
47 |
633 |
| Rv0554 |
bpoC |
16 |
622 |
| Rv0479c, Rv0480c, Rv0481c | - | 32 | 589 |
Regions labeled as 'growth-advantage’ (GA) by the HMM, in which there is an excess of reads, suggesting an over-representation of transposon insertions.