Table 2. Allelic distribution among obese and non-obese subjects.
| Name | Chromosome position | MAF | Assoc. allele | Alleles | Frequencies (cases, controls) | X2 (d.f. = 1) | P | HWE (cases/controls) |
|---|---|---|---|---|---|---|---|---|
| rs1077128 | 53791653 | 0.336 | G | G:T | 0.668, 0.662 | 0.034 | 1.000 | 0.137/0.516 |
| rs11643744 | 53791798 | 0.355 | G | A:G | 0.370, 0.350 | 0.428 | 1.000 | 0.785/0.759 |
| rs7186521 | 53792922 | 0.32 | A | A:G | 0.684, 0.678 | 0.029 | 1.000 | 0.134/0.892 |
| rs13334933 | 53795636 | 0.337 | A | A:G | 0.671, 0.660 | 0.13 | 1.000 | 0.212/0.563 |
| rs16952517 | 53797057 | 0.27 | A | G:A | 0.304, 0.258 | 2.503 | 0.9198 | 0.538/0.522 |
| rs6499643 | 53797518 | 0.226 | T | T:C | 0.804, 0.763 | 2.156 | 0.9694 | 0.970/0.420 |
| rs4784323 | 53797565 | 0.129 | G | G:A | 0.873, 0.869 | 0.032 | 1.000 | 0.297/0.472 |
| rs7206790 | 53797908 | 0.296 | G | C:G | 0.297, 0.295 | 0.007 | 1.000 | 0.394/0.944 |
| rs9939973 | 53800568 | 0.34 | A | G:A | 0.345, 0.338 | 0.05 | 1.000 | 0.278/0.519 |
| rs1421085 | 53800954 | 0.307 | C | T:C | 0.313, 0.304 | 0.09 | 1.000 | 0.210/0.451 |
| rs1558902 | 53803574 | 0.307 | A | T:A | 0.313, 0.304 | 0.09 | 1.000 | 0.210/0.451 |
| rs10852521 | 53804965 | 0.266 | C | C:T | 0.741, 0.732 | 0.087 | 1.000 | 0.343/0.839 |
| rs16952522 | 53807498 | 0.156 | G | C:G | 0.171, 0.150 | 0.74 | 1.000 | 0.718/0.212 |
| rs17817288 | 53807764 | 0.298 | G | G:A | 0.709, 0.699 | 0.101 | 1.000 | 0.558/0.856 |
| rs1121980 | 53809247 | 0.342 | T | C:T | 0.345, 0.340 | 0.022 | 1.000 | 0.778/0.619 |
| rs16945088 | 53812524 | 0.084 | A | A:G | 0.918, 0.915 | 0.024 | 1.000 | 0.996/0.493 |
| rs17817449 | 53813367 | 0.307 | G | T:G | 0.316, 0.303 | 0.196 | 1.000 | 0.134/0.890 |
| rs8050136 | 53816275 | 0.307 | A | C:A | 0.313, 0.304 | 0.09 | 1.000 | 0.210/0.766 |
| rs9935401 | 53816838 | 0.308 | A | G:A | 0.316, 0.305 | 0.133 | 1.000 | 0.134/0.820 |
| rs3751812 | 53818460 | 0.307 | T | G:T | 0.313, 0.304 | 0.09 | 1.000 | 0.210/0.766 |
| rs9939609 | 53820527 | 0.307 | A | T:A | 0.316, 0.304 | 0.163 | 1.000 | 0.134/0.766 |
| rs7190492 | 53828752 | 0.129 | A | G:A | 0.136, 0.126 | 0.214 | 1.000 | 0.165/0.598 |
| rs7204609 | 53833605 | 0.338 | C | T:C | 0.348, 0.334 | 0.191 | 1.000 | 0.703/0.278 |
| rs17218700 | 53844579 | 0.135 | G | G:A | 0.886, 0.857 | 1.709 | 0.986 | 0.462/0.748 |
| rs11642841 | 53845487 | 0.145 | C | C:A | 0.864, 0.852 | 0.266 | 1.000 | 0.476/0.358 |
| rs1861867 | 53848561 | 0.126 | T | C:T | 0.130, 0.125 | 0.053 | 1.000 | 0.352/0.303 |
| rs11075994 | 53850079 | 0.127 | G | G:A | 0.899, 0.864 | 2.567 | 0.913 | 0.747/0.993 |
| rs1421090 | 53850170 | 0.344 | C | T:C | 0.399, 0.324 | 5.713 | 0.331 | 0.217/0.514 |
| rs17818902 | 53871806 | 0.245 | T | T:G | 0.756, 0.754 | 0.006 | 1.000 | 0.810/0.613 |
| rs7191513 | 53990523 | 0.323 | A | G:A | 0.348, 0.314 | 1.263 | 0.997 | 0.074/0.793 |
MAF = minor allele frequency; d.f. = degrees of freedom; HWE = Hardy-Weinberg equilibrium.
*
P value was generated using 5000 permutated chi-squares.