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. 2013 Dec 4;89(6):1043–1057. doi: 10.4269/ajtmh.13-0145

Table 1.

Serotype-specific DENV and JEV oligonucleotide primer and probe sequences*

Virus Forward primer, 5′→3′ Reverse primer, 5′→3′ Probe, 5′→3′
DENV-1 TCAAAGGAGAAGACGGGTGTTGGT TGACCCTGCAGAGACCAATGACTT FAM-ACGGCATGGAAATCAGACCAGTCAAGGA-TAM
DENV-2 GAAATGGGTGCCAACTTCAAGGCT TCTTTGTGCTGCACTAGAGTGGGT FAM-ACTAACAGATGGTGAAGAGCGGGTGA-TAM
DENV-3 AGAAGGTCAGAACCAACGCAGCTA TGTAAACGCAGCTTCCACACTTGC FAM-AAGAGAACCAATGGGACAGTGCGAGA-TAM
DENV-4 ATCTCTAGCGGCCATTGCTAACCA AATAGCATCCCATTGCCAACAGCG FAM-AAAGGATGGCCGCTCCACAGAATGGA-TAM
JEV ACCTGAGACAAAGGAATGCCCTGA CACACGGGTTGATGTGATGCCAAA FAM-AGCACAGAGCTTGGAACAGCATGCAA-TAM
*

DENV = dengue virus; JEV = Japanese encephalitis virus.