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. 2013 Dec 5;8(12):e81520. doi: 10.1371/journal.pone.0081520

Table 2. Genome-wide significant pairwise epistatic interactive SNP pairs for abdominal fat weight, P<1.20×10−11.

GGAF1 SNP1 name GGAS1 SNP2 name Epistatic effect type P-value c (%)
0 GGaluGA194739 1 GGaluGA012915 AA 1.18×10−11 1.08
1 Gga_rs13866305 3 Gga_rs13717259 AD 4.90×10−12 0.68
1 Gga_rs13749637 13 Gga_rs16002106 AA 7.47×10−12 1.40
1 Gga_rs15227054 13 Gga_rs16002106 AA 8.52×10−12 1.38
1 Gga_rs13749637 13 GGaluGA097211 AA 1.02×10−11 1.44
1 Gga_rs13749637 13 GGaluGA097233 AA 7.50×10−13 1.54
1 Gga_rs15227054 13 GGaluGA097233 AA 8.57×10−13 1.51
1 GGaluGA060937 14 GGaluGA101229 AA 3.17×10−12 1.26
2 Gga_rs16026770 2 GGaluGA146662 AA 6.60×10−12 1.05
2 Gga_rs14214495 13 Gga_rs15683090 AA 9.31×10−12 1.14
3 Gga_rs14319575 3 Gga_rs14402423 AA 5.96×10−12 0.91
3 Gga_rs14380677 3 Gga_rs16306728 AA 8.25×10−12 1.10
3 Gga_rs16306728 3 GGaluGA231041 AA 1.09×10−11 1.07
3 Gga_rs14319575 3 GGaluGA236122 AA 5.96×10−12 0.91
3 Gga_rs14388313 5 Gga_rs14521876 AA 8.46×10−13 1.14
3 Gga_rs14368109 10 GGaluGA071224 AD 6.80×10−12 0.62
3 Gga_rs14368127 10 GGaluGA071224 AD 7.23×10−12 0.63
3 Gga_rs16228738 14 Gga_rs14075705 AA 8.12×10−13 1.42
3 Gga_rs16222762 20 Gga_rs14272866 AA 1.30×10−12 1.13
3 Gga_rs16228738 23 Gga_rs13622160 AA 7.99×10−12 1.20
3 Gga_rs16228738 23 GGaluGA188871 AA 9.80×10−12 1.15
3 Gga_rs14340790 27 Gga_rs14303341 AA 1.16×10−11 1.25
3 Gga_rs14341204 27 Gga_rs14303341 AA 1.42×10−12 1.29
3 Gga_rs14341224 27 Gga_rs14303341 AA 6.31×10−13 1.36
3 Gga_rs14341242 27 Gga_rs14303341 AA 5.68×10−13 1.38
3 Gga_rs14341255 27 Gga_rs14303341 AA 5.68×10−13 1.38
3 Gga_rs16254447 27 Gga_rs14303341 AA 6.31×10−13 1.36
3 GGaluGA216762 27 Gga_rs14303341 AA 1.36×10−12 1.31
4 Gga_rs15480969 20 Gga_rs14276105 AA 1.05×10−11 1.54
7 GGaluGA317680 14 Gga_rs15718248 AA 1.05×10−11 1.23
9 Gga_rs16674724 3 Gga_rs14319575 AA 1.05×10−12 1.01
10 Gga_rs15583507 6 Gga_rs13561344 AA 2.80×10−12 1.32
10 Gga_rs14009265 6 Gga_rs14560750 AA 5.35×10−13 1.18
10 Gga_rs15583507 6 Gga_rs14560750 AA 2.15×10−12 1.30
10 GGaluGA066690 10 GGaluGA066877 AA 4.66×10−13 1.27
10 GGaluGA069801 23 Gga_rs13622160 AA 5.56×10−12 1.15
10 GGaluGA069801 23 Gga_rs14290610 AA 4.64×10−12 1.26
14 Gga_rs14068999 23 GGaluGA188871 AA 3.29×10−12 1.12
14 Gga_rs15717370 23 GGaluGA188871 AA 3.29×10−12 1.12
18 Gga_rs10729280 13 Gga_rs14988623 AD 6.56×10−14 1.10
18 Gga_rs13569377 13 Gga_rs14988623 AD 2.54×10−14 1.14
18 Gga_rs14416916 13 Gga_rs14988623 AD 9.00×10−14 1.07
18 Gga_rs15469971 13 Gga_rs14988623 AD 2.92×10−14 1.10
Z Gga_rs14748835 8 Gga_rs14658668 AA 1.14×10−11 1.20
Z Gga_rs16094710 8 Gga_rs14658668 AA 1.14×10−11 1.20
Z Gga_rs16758057 8 Gga_rs14658668 AA 1.14×10−11 1.20
Z Gga_rs14748835 8 Gga_rs16650878 AA 1.11×10−11 1.20
Z Gga_rs16094710 8 Gga_rs16650878 AA 1.11×10−11 1.20
Z Gga_rs16758057 8 Gga_rs16650878 AA 1.11×10−11 1.20
Z Gga_rs14748835 8 GGaluGA333545 AA 1.14×10−11 1.20
Z Gga_rs16094710 8 GGaluGA333545 AA 1.14×10−11 1.20
Z Gga_rs15991936 10 Gga_rs15589655 AA 8.33×10−12 1.28
1

GGA F = The first chromosome in the pairwise epistasis analysis; GGA S = The second chromosome in the pairwise epistasis analysis; AA = Additive×Additive effect, AD = Additive×Dominance effect, DA = Dominance×Additive effect, DD = Dominance×Dominance effect; P-value = P-value of the effect being tested; c = The contribution rate (%) of every significant epistatic interactive SNP pair.