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. 2013 Dec 6;8(12):e81152. doi: 10.1371/journal.pone.0081152

Table 2. Diversity index (HGDI) calculated for each locus and for panels 1, 2A, 2B and MLVA16 according to the biovars of B. abortus isolated from cattle, Brazil, 1977 to 2008.

Group/Locus Biovar 1 Biovar 2 Biovar 3 Biovar 6
Typesa HGDIb Types HGDI Types HGDI Types HGDI
Panel 1 5 0.16 2 0.07 3 0.14 2 0.1
Bruce06 2 0.05 2 0.12 2 0.07 2 0.09
Bruce08 2 0.03 1 0.00 2 0.07 1 0.00
Bruce11 2 0.03 1 0.00 1 0.00 2 0.09
Bruce12 3 0.08 1 0.00 1 0.00 2 0.09
Bruce42 1 0.00 1 0.00 1 0.00 1 0.00
Bruce43 1 0.00 1 0.00 1 0.00 1 0.00
Bruce45 2 0.03 1 0.00 1 0.00 2 0.09
Bruce55 1 0.00 1 0.00 2 0.07 1 0.00
Panel 2A 7 0.42 4 0.74 4 0.62 7 0.73
Bruce18 3 0.18 1 0.00 1 0.00 4 0.27
Bruce19 2 0.13 2 0.50 3 0.37 3 0.40
Bruce21 2 0.26 3 0.62 2 0.35 5 0.54
Panel 2B 38 0.96 10 0.93 18 0.95 12 0.95
Bruce04 4 0.49 2 0.50 9 0.88 8 0.87
Bruce07 3 0.46 2 0.12 2 0.07 3 0.33
Bruce09 4 0.08 1 0.00 2 0.07 2 0.09
Bruce16 6 0.70 3 0.59 2 0.35 2 0.18
Bruce30 6 0.62 4 0.67 3 0.20 2 0.18
MLVA16 48 0.93 14 0.98 21 0.97 16 0.98
a

Number of genotypes;

b

Diversity index calculated according to Hunter and Gaston (1988) [32].