Table 2. Diversity index (HGDI) calculated for each locus and for panels 1, 2A, 2B and MLVA16 according to the biovars of B. abortus isolated from cattle, Brazil, 1977 to 2008.
Group/Locus | Biovar 1 | Biovar 2 | Biovar 3 | Biovar 6 | ||||
Typesa | HGDIb | Types | HGDI | Types | HGDI | Types | HGDI | |
Panel 1 | 5 | 0.16 | 2 | 0.07 | 3 | 0.14 | 2 | 0.1 |
Bruce06 | 2 | 0.05 | 2 | 0.12 | 2 | 0.07 | 2 | 0.09 |
Bruce08 | 2 | 0.03 | 1 | 0.00 | 2 | 0.07 | 1 | 0.00 |
Bruce11 | 2 | 0.03 | 1 | 0.00 | 1 | 0.00 | 2 | 0.09 |
Bruce12 | 3 | 0.08 | 1 | 0.00 | 1 | 0.00 | 2 | 0.09 |
Bruce42 | 1 | 0.00 | 1 | 0.00 | 1 | 0.00 | 1 | 0.00 |
Bruce43 | 1 | 0.00 | 1 | 0.00 | 1 | 0.00 | 1 | 0.00 |
Bruce45 | 2 | 0.03 | 1 | 0.00 | 1 | 0.00 | 2 | 0.09 |
Bruce55 | 1 | 0.00 | 1 | 0.00 | 2 | 0.07 | 1 | 0.00 |
Panel 2A | 7 | 0.42 | 4 | 0.74 | 4 | 0.62 | 7 | 0.73 |
Bruce18 | 3 | 0.18 | 1 | 0.00 | 1 | 0.00 | 4 | 0.27 |
Bruce19 | 2 | 0.13 | 2 | 0.50 | 3 | 0.37 | 3 | 0.40 |
Bruce21 | 2 | 0.26 | 3 | 0.62 | 2 | 0.35 | 5 | 0.54 |
Panel 2B | 38 | 0.96 | 10 | 0.93 | 18 | 0.95 | 12 | 0.95 |
Bruce04 | 4 | 0.49 | 2 | 0.50 | 9 | 0.88 | 8 | 0.87 |
Bruce07 | 3 | 0.46 | 2 | 0.12 | 2 | 0.07 | 3 | 0.33 |
Bruce09 | 4 | 0.08 | 1 | 0.00 | 2 | 0.07 | 2 | 0.09 |
Bruce16 | 6 | 0.70 | 3 | 0.59 | 2 | 0.35 | 2 | 0.18 |
Bruce30 | 6 | 0.62 | 4 | 0.67 | 3 | 0.20 | 2 | 0.18 |
MLVA16 | 48 | 0.93 | 14 | 0.98 | 21 | 0.97 | 16 | 0.98 |
Number of genotypes;
Diversity index calculated according to Hunter and Gaston (1988) [32].