Table 2.
The number of reads for each microbe genus per gut type (pooled samples)
| Phylum | Genus | Ps AMG | Ra AMG | Ra PMG | Total |
|---|---|---|---|---|---|
| Actinobacteria |
Arthrobacter |
|
3 |
|
3 |
| Actinobacteria |
Brevibacterium |
1 |
1 |
2 |
4 |
| Actinobacteria |
Conexibacter |
|
2 |
|
2 |
| Actinobacteria |
Janibacter |
|
2 |
|
2 |
| Actinobacteria |
Propionibacterium |
2 |
3 |
11 |
16 |
| Actinobacteria |
Sanguibacter |
|
1 |
|
1 |
| Actinobacteria |
Streptomyces |
|
1 |
|
1 |
| Armatimonadetes |
Armatimonadetes_gp5 |
|
1 |
|
1 |
| Bacteroidetes |
Bacteroides |
1 |
|
|
1 |
| Bacteroidetes |
Cloacibacterium |
|
4 |
|
4 |
| Bacteroidetes |
Flavobacterium |
|
1 |
|
1 |
| Firmicutes |
Bacillus |
|
3 |
1 |
4 |
| Firmicutes |
Clostridium sensu stricto |
|
|
1 |
1 |
| Firmicutes |
Clostridium XI |
1 |
|
|
1 |
| Firmicutes |
Exiguobacterium |
|
1 |
|
1 |
| Firmicutes |
Lactococcus |
|
1 |
|
1 |
| Firmicutes |
Pelospora |
|
2 |
|
2 |
| Firmicutes |
Planifilum |
|
|
2 |
2 |
| Firmicutes |
Planococcaceae_incertae_sedis |
|
|
1 |
1 |
| Firmicutes |
Sedimentibacter |
1 |
|
|
1 |
| Firmicutes |
Staphylococcus |
1 |
6 |
|
7 |
| Firmicutes |
Streptococcus |
|
2 |
|
2 |
| Firmicutes |
Weissella |
|
1 |
|
1 |
| Lentisphaerae |
Victivallis |
3 |
|
|
3 |
| Proteobacteria |
Acidovorax |
4 |
4 |
4 |
12 |
| Proteobacteria |
Acinetobacter |
7 |
2 |
4 |
13 |
| Proteobacteria |
Alcanivorax |
|
|
1 |
1 |
| Proteobacteria |
Aquabacterium |
10 |
4 |
6 |
20 |
| Proteobacteria |
Arcobacter |
10 |
4 |
3 |
17 |
| Proteobacteria |
Azospira |
|
|
1 |
1 |
| Proteobacteria |
Belnapia |
|
1 |
|
1 |
| Proteobacteria |
Bordetella |
|
1 |
|
1 |
| Proteobacteria |
Brevundimonas |
2 |
1 |
|
3 |
| Proteobacteria |
Burkholderia |
|
3 |
|
3 |
| Proteobacteria |
Caulobacter |
1 |
3 |
|
4 |
| Proteobacteria |
Comamonas |
1 |
1 |
1 |
3 |
| Proteobacteria |
Cupriavidus |
2 |
|
2 |
4 |
| Proteobacteria |
Enhydrobacter |
2 |
|
|
2 |
| Proteobacteria |
Escherichia/Shigella |
1 |
|
1 |
2 |
| Proteobacteria |
Herbaspirillum |
|
2 |
1 |
3 |
| Proteobacteria |
Hyphomicrobium |
1 |
|
|
1 |
| Proteobacteria |
Legionella |
3 |
|
|
3 |
| Proteobacteria |
Methylobacterium |
2 |
2 |
|
4 |
| Proteobacteria |
Methyloversatilis |
|
2 |
1 |
3 |
| Proteobacteria |
Novosphingobium |
5 |
2 |
|
7 |
| Proteobacteria |
Ochrobactrum |
1 |
2 |
|
3 |
| Proteobacteria |
Pantoea |
|
3 |
|
3 |
| Proteobacteria |
Paracoccus |
|
2 |
|
2 |
| Proteobacteria |
Pelomonas |
1 |
|
|
1 |
| Proteobacteria |
Pseudomonas |
4 |
8 |
4 |
16 |
| Proteobacteria |
Raoultella |
|
|
1 |
1 |
| Proteobacteria |
Rheinheimera |
|
|
1 |
1 |
| Proteobacteria |
Rhizobacter |
|
4 |
|
4 |
| Proteobacteria |
Shewanella |
|
1 |
|
1 |
| Proteobacteria |
Simplicispira |
|
4 |
|
4 |
| Proteobacteria |
Smithella |
1 |
1 |
|
2 |
| Proteobacteria |
Sphingobium |
21 |
6 |
9 |
36 |
| Proteobacteria |
Sphingomonas |
4 |
1 |
2 |
7 |
| Proteobacteria |
Stenotrophomonas |
|
1 |
|
1 |
| Proteobacteria |
Undibacterium |
1 |
|
2 |
3 |
| Proteobacteria |
Zoogloea |
3 |
|
1 |
4 |
| Tenericutes |
Haloplasma |
|
|
1 |
1 |
| Tenericutes |
Spiroplasma |
15 |
65 |
5,331 |
5,411 |
| TM7 |
TM7_genera_incertae_sedis |
|
6 |
1 |
7 |
| Sum | 112 | 171 | 5,396 | 5,679 |
The taxomic assignment at genus level was based on RDP CLASSIFIER. Ps = P. schultei. Ra = R. artemis.