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. Author manuscript; available in PMC: 2014 Oct 1.
Published in final edited form as: Arch Virol. 2013 May 1;158(10):10.1007/s00705-013-1674-y. doi: 10.1007/s00705-013-1674-y

Fig. 1.

Fig. 1

Phylogenetic relationship of NYMV, MIDWV, and SbCNV-1 to other mononegaviruses. A maximum-likelihood tree was constructed using PhyML 3.0 (http://www.atgc-montpellier.fr/phyml/) based on a multiple amino acid sequence alignment of the RdRp polymerase core module as described previously [34]. Virus names and GenBank/RefSeq accession numbers: bornaviruses - Borna disease virus (BDV; NP_042024), avian bornavirus genotype 2 (ABV2; ADU05398); filoviruses - Sudan virus (SUDV; YP_138527), Marburg virus (MARV; YP_001531159); paramyxoviruses - Newcastle disease virus (NDV; NP_071471), Hendra virus (HeV; NP_047113), measles virus (MeV; NP_056924), Sendai virus (SeV; NP_056879), mumps virus (MuV; NP_054714), avian metapneumovirus (AMPV; YP_443845), human respiratory syncytial virus (HRSV; NP_056866); rhabdoviruses - rabies virus (RABV; NP_056797), bovine ephemeral fever virus (BEFV; NP_065409), vesicular stomatitis Indiana virus (VSIV; NP_041716), infectious hematopoietic necrosis virus (IHNV; NP_042681), potato yellow dwarf virus (PYDV; YP_004927971), lettuce necrotic yellows virus (LNYV; YP_425092); nyamiviruses - Nyamanini virus (NYMV; YP_002905337), Midway virus (MIDWV; YP_002905331), soybean cyst nematode virus 1 (SbCNV-1; AEF56729). Obtained and aligned partial or fragment sequences are depicted in boxes. Mononegavirus L-like protein sequences (MLLSs) in pea powdery mildew fungus (Erysiphe pisi) (EpMLLS), yellow fever mosquito (Aedes aegypti) (AaMLLS), zebrafish (Danio rerio) (DrMLLS); nyamivirus L-like protein sequences (NLLSs) in lettuce (Lactuca sativa) (LsNLLS), silkworm (Bombyx mori) (BmNLLS), leafcutter bee (Megachile rotundata) (MrNLLS), black carpenter and fire ants (Camponotus pennsylvanicus and Solenopsis invicta) (CfNLLS and SiNLLS); transcriptome shotgun assembly mononegavirus L-like protein sequences (ShTSA-L) in an ascomycete fungus causing dollar spot (Sclerotinia homoeocarpa) (ShTSA-L). Numbers at the nodes represent aLRT values derived using an SH-like calculation (only values greater than 0.7 are shown). Note that the zebra fish (Animalia: Chordata: Actinopterygii: Cypriniformes: Cyprinidae: Danio rerio Hamilton, 1822) sequence was first reported as another NLLS [4], but is has very poor sequence similarity (≈20 %) to MIDWV L and clusters more with MLLSs from fungi. The sequence is therefore listed as an MLLS (DrMLLS) in the figure