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. Author manuscript; available in PMC: 2014 Oct 1.
Published in final edited form as: Arch Virol. 2013 May 1;158(10):10.1007/s00705-013-1674-y. doi: 10.1007/s00705-013-1674-y

Table 4. Proposed variant nomenclature.

Virus (abbreviation) Isolate designations in the literature, including synonyms Proposed full-length variant designation Proposed medium-length variant designation Proposed abbreviation*
Nyamanini virus (NYMV)
Ar-1304[29]; Eg Ar 1304 [43]; EgAr 1304 [30, 55]; strain Ar-1304 [56, 57]; strain Ar-1304 prototype [56]; strain EgAr 1304 [9]; topotype Eg Ar 1304 [59] Nyamanini virus A.arboreus-tc/EGY/1954/Barrage-EgAr1304 NYMV/A.arb/EGY/54/Bar-EgAr1304 NYMV/Bar-EgAr1304
strain Ar-1156 [56, 57] Nyamanini virus A.arboreus-tc/EGY/1954/Barrage-EgAr1156
NYMV/A.arb/EGY/54/Bar-EgAr1156
NYMV/Bar-EgAr1156
strain An-2252 [56, 57] Nyamanini virus B.ibis-tc/EGY/1954/Barrage-EgAn2252
NYMV/B.ibi/EGY/54/Bar-EgAn2252
NYMV/Bar-EgAn2252
An 2526 [5, 58]; prototype SA An 2526 [59]; strain SAAn 2526 [30, 69] Nyamanini virus B.ibis-tc/ZAF/1957/Ndumu-SAAn2526
NYMV/B.ibi/ZAF/57/Ndu-SAAn2526
NYMV/Ndu-SAAn2526
4 unnamed isolates [27, 28] Nyamanini virus B.ibis-tc/ZAF/1959-1960/Naboomspruit-1-4
NYMV/B.ibi/ZAF/59-60/Nab-1-4
NYMV/Nab-1-4
14 unnamed isolates [27, 28] Nyamanini virus A.arboreus-tc/ZAF/1959-1960/Naboomspruit-5-18
NYMV/A.arb/ZAF/59-60/Nab-5-18
NYMV/Nab-5-18
isolants strain 2558-59 [29]; prototype field isolants [29]; prototype isolants [29]; prototype strain 2558-59 [29]; Type 2558-59 [29] Nyamanini virus A.arboreus-tc/EGY/1963/Qalyub-2558-59
NYMV/A.arb/EGY/63/Qal-2558-59
NYMV/Qal-2558-59
75 unnamed isolants [29] Nyamanini virus A.arboreus-tc/EGY/1963-1964/Qalyub-1-75
NYMV/A.arb/EGY/63-64/Qal-1-75
NYMV/Qal-1-75
isolate tick 39 [42]; tick isolate 39 [23, GenBank]; unnamed isolate from sample HH20,374 [25] Nyamanini virus A.robertsi-tc/THA/1967/Wat Phai Lom-tick39
NYMV/A.rob/THA/67/Wat-tick39
NYMV/Wat-tick39
11 unnamed isolates [31] Nyamanini virus A.arboreus-tc/NGA/1970/Dalori-1-11
NYMV/A.arb/NGA/70/Dal-1-11
NYMV/Dal-1-11
4 unnamed isolates [31] Nyamanini virus A.arboreus-tc/NGA/1970/Gangaba-1-4
NYMV/A.arb/NGA/70/Gan-1-4
NYMV/Gan-1-4
unnamed isolate from sample HH21,363 [25] Nyamanini virus A.robertsi-tc/LKA/1972/Wilpattu-HH21363
NYMV/A.rob/LKA/72/Wil-HH21363
NYMV/Wil-HH21363
topotype I 64434 [59] Nyamanini virus A.cinerea-tc/IND/XXX/India-I64434
NYMV/A.cin/IND/XXX/Ind-I64434
NYMV/Ind-I64434
topotype Nep Ar 89 [59] Nyamanini virus A.reflexus-tc/NPL/XXX/Nepal-NepAr89
NYMV/A.ref/NPL/XXX/Nep-NepAr89
NYMV/Nep-NepAr89
Midway virus (MIDWV)
strain Sand I. (RML 47153) [55]; RML47153 [42, GenBank] Midway virus O.capensis-tc/USA/1966/Midway-RML47153
MIDWV/O.cap/USA/66/Mid-RML47153
MIDWV/Mid-RML47153
strain Kure (RML 47156) [55] Midway virus O.capensis-tc/USA/1966/Kure-RML47156
MIDWV/O.cap/USA/66/Kur-RML47156
MIDWV/Kur-RML47156
Hirota (Cap-15) [55] Midway virus O.capensis-tc/JPN/1971/Hirota-Cap15
MIDWV/O.cap/JPN/71/Hirota-Cap15
MIDWV/Hirota-Cap15
Hirota (Cap-39) [55] Midway virus O.capensis-tc/JPN/1972/Hirota-Cap39
MIDWV/O.cap/JPN/72/Hirota-Cap39
MIDWV/Hirota-Cap39
Hirota (Cap-40) [55] Midway virus O.capensis-tc/JPN/1972/Hirota-Cap40
MIDWV/O.cap/JPN/72/Hirota-Cap40
MIDWV/Hirota-Cap40
Hirota (Cap-41) [55] Midway virus O.capensis-tc/JPN/1972/Hirota-Cap41
MIDWV/O.cap/JPN/72/Hirota-Cap41
MIDWV/Hirota-Cap41
Hirota (Cap-43) [55] Midway virus O.capensis-tc/JPN/1972/Hirota-Cap43
MIDWV/O.cap/JPN/72/Hirota-Cap43
MIDWV/Hirota-Cap43
Hirota (Cap-44) [55] Midway virus O.capensis-tc/JPN/1972/Hirota-Cap44
MIDWV/O.cap/JPN/72/Hirota-Cap44
MIDWV/Hirota-Cap44
Manana (RML 63668) [55] Midway virus O.denmarki-tc/USA/1973/Manana-RML63668
MIDWV/O.den/USA/73/Man-RML63668
MIDWV/Man-RML63668
soybean cyst nematode virus 1 (SbCNV-1)
unnamed genetic variant [3, GenBank] soybean cyst nematode virus 1 H.glycines-wt/USA/2010/Urbana-10
SbCNV-1/H.gly/USA/10/Urb-10
SbCNV-1/Urb-10

XXX, data for field unknown

*

At this point in time, it is unclear which of these variants is/are not available anymore, i.e., may have been lost or destroyed. Following the nomenclature described in 35, “-tc” may have to be changed to “-hist” in the future