Table 1. R Packages Required for the Simulation Study’s Implementation.
| Package | Version | Repository |
| abind | 1.4–0 | CRAN |
| AMAP.Seq | 1.0 | CRAN |
| Biobase | 2.18.0 | Bioconductor |
| clusterGeneration | 1.3.1 | CRAN |
| DESeq | 1.10.1 | Bioconductor |
| DSS | 1.0.0 | Bioconductor |
| edgeR | 3.0.8 | Bioconductor |
| ggplot2 | 0.9.3.1 | CRAN |
| hexbin | 1.26.1 | CRAN |
| iterators | 1.0.6 | CRAN |
| magic | 1.5–4 | CRAN |
| MASS | 7.3–23 | CRAN |
| multicore | 0.1–7 | CRAN |
| plyr | 1.8 | CRAN |
| QuasiSeq | 1.0–2 | CRAN |
| pracma | 1.4.5 | CRAN |
| reshape2 | 1.2.2 | CRAN |
For the full implementation, please see Simulation Code S1.