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. 2013 Dec 9;8(12):e81784. doi: 10.1371/journal.pone.0081784

Table 1. The top 25 terms of Ingenuity Functional Enrichment Analysis for the genes found by ExprEssence (E40), the genes found by OptDis (O39) and the genes found by KeyPathwayMiner (KPM1 network).

Enriched Functional Terms
E40 Genes O39 Genes KPM1 Network Genes
Cell cycle progression Transactivation of RNA Differentiation of cells
Breast cancer Development of tumor Proliferation of neuronal cells
Carcinoma in breast Cell cycle progression Migration of neural crest cells
Chromosomal congression of chromosomes Cell movement Cell movement
Amenorrhea Proliferation of tumor cell lines Development of central nervous system
Digestive organ tumor Necrosis Migration of cells
Proliferation of cells Transcription Transactivation of RNA
Metrorrhagia Proliferation of connective tissue cells Expression of RNA
Plaque psoriasis Migration of cells Transcription of RNA
Proliferation of tumor cells Apoptosis of tumor cell lines Proliferation of cells
Cell movement Transcription of RNA Development of autonomic nervous system
Uterine hemorrhaging Proliferation of cells Transcription of DNA
Proliferation of breast cancer cell lines Cell survival Apoptosis
M phase Cell death Abnormal morphology of embryonic tissue
Invasion of tumor cell lines Cell death of tumor cell lines Development of brain
Triple-negative breast cancer Proliferation of epithelial cells Differentiation of muscle cells
Cancer Differentiation of cells Development of lymphatic system component
Cell cycle progression of tumor cell lines Hypoplasia Morphology of head
Mitosis Cell viability Morphology of nervous system
Organization of cytoskeleton Apoptosis Activation of DNA endogenous promoter
Invasion of cells Synthesis of DNA Development of cerebellum
Skin development Proliferation of fibroblasts Development of body axis
Development of epidermis Binding of DNA Abnormal morphology of endolymphatic duct
Epithelial neoplasia Quantity of cells Proliferation of epithelial cells
Gastrointestinal Tract Cancer and Tumors Abnormal morphology of embryonic tissue Cell death

Table S4 and Table S5 contain also p -values and the lists of the genes associated with the terms.