Table 1.
Software tool | Purpose |
---|---|
Andromeda | Database search |
MS-GFDB | Database search |
pFind | Database search |
pNovo | De novo sequencing |
PeptideProphet | PSM validation |
Percolator | PSM validation |
FDRAnalysis | Multiple search combination |
iProphet | Multiple search combination |
Pepitome | Spectral library searching |
PeptideAtlas | Annotated spectrum repository |
Fido | Protein inference |
IDPicker 2.0 | Protein inference |
MAYU | Protein inference |
ProteinProphet | Protein inference |
MaxQuant | Analytical software suite |
Trans-Proteomic Pipeline | Analytical software suite |