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. Author manuscript; available in PMC: 2013 Dec 9.
Published in final edited form as: Proteomics. 2012 Apr;12(8):10.1002/pmic.201100571. doi: 10.1002/pmic.201100571

Table 2.

General Overview of Commercial Software Tools for SRM Post Acquisition.

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Name MultiQuant™ Pinpoint™ MassHunter™ TargetLynx™
License Commercial Commercial Commercial Commercial
Input files and its
format (such as
transition list in txt
and .raw for SRM
data
measurement)		 .wiff files (created by
Analyst® instrument
control software),
transition list can be
imported in Analyst® as
Microsoft Excel csv file		 .raw .d .raw directory
Multi Input file
Processing
Capability		 Yes Yes Yes Yes
Operating System Windows Windows Windows Windows
Reference paper or
website of the
software		 stand-alone stand-alone stand-alone stand-alone
Reference paper or
website of the
software		 http://www.absciex.com/Products/Software/MultiQuant-Software http://www.thermoscientific.com/ecomm/servlet/productsdetail?productId=12784473&&storeId=11152 http://www.chem.agilent.com/en-US/products/software/chromatography/ms/masshunterworkstation/Pages/default.aspx http://www.waters.com/waters/nav.htm?cid=513164
Applications C. elegans, Yeast,
Human Cell line		 Human Plasma and Urine,
yeast		 Human Plasma Human blood, serum, CSF
Interner Standard
Peptide
Measurement
Required		 No No No Yes
Automation semi-automated semi-automated semi-automated fully automated