Table 2. Difference of ROH (F L) between selected and unselected groups.
|
Group II-A vs I
|
Group II-B vs I
|
|||||
|---|---|---|---|---|---|---|
| Chr | Candidate region1 | Max (Mb) | Difference of FL (p-value)2 | Candidate region1 | Max (Mb) | Difference of FL (p-value)2 |
| 1 | 2.85-4.05 | 3.64 | 0.09 (4.05) | - | - | - |
| 47.30-67.73 | 52.25 | 0.15 (8.81) | 47.70-67.33 | 53.53 | 0.17 (7.49) | |
| 76.51-84.94 | 79.59 | 0.14 (8.98) | 74.20-82.03 | 79.59 | 0.14 (8.98) | |
| 2 | 111.58-134.31 | 131.46 | 0.17 (10.34) | 111.58-134.31 | 131.46 | |
| 3 | 69.90-70.39 | 70.26 | 0.12 (5.66) | 69.90-71.23 | 70.26 | 0.12 (5.66) |
| - | - | - | 116.98-117.15 | 117.15 | 0.10 (4.79) | |
| 5 | - | - | - | 42.68-46.74 | 45.11 | 0.14 (6.05) |
| 96.58-104.48 | 97.32 | 0.14 (8.09) | 97.22-101.40 | 98.83 | 0.14 (5.84) | |
| 6 | 19.58-20.51 | 20.51 | 0.09 (4.18) | - | - | - |
| - | - | - | 81.55-83.15 | 82.31 | 0.16 (4.67) | |
| 8 | 40.59-57.56 | 49.04 | 0.09 (5.07) | - | - | - |
| 61.51-67.96 | 64.12 | 0.10 (4.91) | 63.95-65.30 | 64.11 | 0.12 (4.69) | |
| 87.07-88.81 | 87.07 | 0.10 (4.09) | - | - | - | |
| - | - | - | 94.41-97.45 | 94.41 | 0.15 (6.07) | |
| 9 | 57.54-62.15 | 59.31 | 0.09 (4.73) | 57.54-64.54 | 60.47 | 0.12 (5.41) |
| 69.14-79.99 | 72.21 | 0.08 (5.19) | 71.11-79.99 | 79.99 | 0.12 (4.91) | |
| 10 | 36.11-38.75 | 37.66 | 0.11 (4.52) | - | - | - |
| 48.42-65.47 | 55.32 | 0.15 (7.83) | - | - | - | |
| 70.59-74.06 | 70.59 | 0.12 (6.01) | 70.48-71.99 | 71.10 | 0.13 (4.25) | |
| 11 | 5.01-7.51 | 6.92 | 0.13 (6.76) | - | - | - |
| 88.26-88.90 | 88.83 | 0.09 (4.64) | - | - | - | |
| 12 | 33.6-37.01 | 35.12 | 0.13 (7.59) | - | - | - |
| 13 | 11.83-12.19 | 12.19 | 0.09 (4.57) | - | - | - |
| 20.62-21.61 | 20.62 | 0.09 (3.83) | - | - | - | |
| 30.26-33.46 | 32.62 | 0.10 (4.15) | - | - | - | |
| 36.65-39.02 | 36.73 | -0.09 (4.67) | - | - | - | |
| - | - | - | 47.55-47.92 | 47.55 | 0.18 (4.97) | |
| - | - | - | 55.75-56.09 | 55.75 | 0.16 (4.13) | |
| 14 | 77.27-77.93 | 77.75 | 0.09 (4.41) | - | - | - |
| 16 | 58.60-60.37 | 60.37 | 0.11 (5.04) | - | - | - |
| 71.43-71.77 | 71.55 | 0.09 (71.43) | - | - | - | |
| 18 | - | - | - | 39.25-41.18 | 40.00 | -0.07 (9.83) |
| 20 | 20.49-49.96 | 46.41 | 0.13 (6.09) | - | - | - |
| 21 | 26.94-27.93 | 27.22 | 0.07 (4.28) | 26.94-27.30 | 27.14 | 0.08 (4.01) |
| 22 | 7.39-10.56 | 9.27 | 0.09 (4.87) | 6.99-18.25 | 15.97 | 0.17 (7.76) |
| 13.99-18.25 | 14.95 | 0.12 (6.76) | - | - | - | |
| - | - | - | 23.55-23.92 | 22.50 | 0.15 (4.09) | |
| 26 | - | - | - | 19.51-20.1 | 19.91 | 0.16 (4.95) |
| 35.26-43.15 | 41.85 | 0.12 (6.47) | 30.96-43.15 | 41.68 | 0.22 (10.19) | |
| 29 | 41.33-43.01 | 41.71 | 0.10 (4.27) | 43.43-43.84 | 43.65 | 0.12 (3.93) |
1
Gap smaller than 1 Mb between two regions was regarded as continuous region
2
Chi-square test