Table 2. Isolation and identification of novel miRNAs in larch embryo.
Name | Sequence(5′-3′) | Nucleotide(length) | Read(Dormant embryo) | Read(Germinated embryo) | Containing EST |
llemiR-1 | UGCCGUGGUUCGGAGCGAUCGA | 22 | 11005 | 15905 | JR179967 |
llemiR-1* | AUCCUCCCAACCAAGGCAACC | 21 | 2 | 7 | JR179967 |
llemiR-2 | UGACCAGUCCUUCUGCGAUCCA | 22 | 148 | 162 | JR164575 |
llemiR-2* | AAUUGCAGAAGGGCUGGUUAGC | 22 | 789 | 1007 | JR164575 |
llemiR-3 | UCAAGUGUUUCUGGACUCACC | 21 | 5 | 0 | JR164003 |
llemiR-3* | UGAGUCCAGACACACUUCGGC | 21 | 1 | 1 | JR164003 |
llemiR-4 | UUUGAUAGAUCCGAGGUUAAG | 21 | 70 | 64 | PEMSG842Xa |
llemiR-5 | UGCAAAUGGUGUUUGCGUCGU | 21 | 16 | 26 | JR170741 |
llemiR-6 | UCCAUGACUUUCCAGAGGGGU | 21 | 336 | 298 | JR184550 |
llemiR-7 | UCAUUCCAGUUAUCGUUCUCC | 22 | 50 | 74 | JR185282 |
llemiR-8 | UCUGCCUGGUACCUUGACGUA | 21 | 98 | 124 | JR174289 |
llemiR-9 | UCGCAGGUGAGAUGACGCCGGC | 22 | 52 | 88 | JR160786 |
llemiR-10 | UGAGCUCUUGGAAGUGUUGGA | 21 | 205 | 290 | PEMSJJR7Ea |
llemiR-11 | GCCGUGACCGUGGCGAUCGUGG | 22 | 9 | 7 | JR167874 |
llemiR-12 | UACACCUCAAGAAAUUGGAUCCCU | 24 | 4 | 1 | JR176014 |
llemiR-13 | UGAUUCAGGCAUGGAGGAGGACUA | 24 | 10 | 1 | JR179449 |
llemiR-14 | UCUUUCUGAGGCAUGUAUGGGCAU | 24 | 6 | 1 | JR181565 |
llemiR-15 | UCAGUGAGCUUAGGGUACGUUGG | 23 | 0 | 4 | JR184842 |
llemiR-16 | UCGGAAUGCUGGAGGAGGCAA | 21 | 1 | 6 | JR190670 |
llemiR-17 | UGAGUCCAGACACACUUCGGCU | 22 | 4 | 3 | JR164003 |
llemiR-18 | CAACGAUCAACAGGACCACUG | 21 | 24 | 16 | JR195099 |
llemiR-19 | UGUGACGGGGAUGGGAUGCU | 20 | 0 | 11 | JR155419 |
The sequences of PEMSG842X and PEMSJJR7E containing the mature sequence of llemiR-4 and llemiR-10 were not submitted to the TSA database because their length were less than 200 nt.