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. 2013 Dec 10;8(12):e82080. doi: 10.1371/journal.pone.0082080

Table 3. Hydrogen bonds existing in Loop 2 (residues from 214 to 229) of wild-type NDM-1 and Y229W mutant, and their occupancies during the last 4 ns of MD simulations.

NDM-1 Y229W mutant
Donor Acceptor Occupancy (%) Donor Acceptor Occupancy (%)
K214@ N D212@OD1 84.14 K214@ N D212@OD1 88.96
H261@ NE2 A215@O 90.19 H261@ NE2 A215@O 98.06
A215@ N D212@O 99.55 A215@ N D212@O 98.00
A224@ N N220@O 99.76 —— —— ——
D223@ N N220@O 98.04 —— —— ——
G222@ N N220@OD1 85.64 —— —— ——
—— —— —— W229@ N D225@O 55.38
—— —— —— H228@ N D225@O 53.72
E227@ N D225@OD1 99.10 —— —— ——
H228@ N D225@OD1 99.43 —— —— ——
D225@ N G188@O 99.45 —— —— ——
—— —— —— A230@ N T226@O 85.96
—— —— —— T226@ OG1 L269@O 57.93
S232@ N H228@O 96.63 S232@ N H228@O 98.58
A231@ N H228@O 60.30 —— —— ——
Y229@ OH L209@O 99.83 W229@ NE1 L209@O 98.75
A233@ N Y229@O 93.83 A233@ N W229@O 96.86

Only H-bonds with occupancies >50% are shown.

—— Not observed.